Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301E09f
(428 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF450317-1|AAL48256.1| 180|Homo sapiens MHC class II antigen pr... 32 0.72
BC104956-1|AAI04957.1| 1700|Homo sapiens SKIP protein protein. 31 1.7
BC104954-1|AAI04955.1| 1700|Homo sapiens SKIP protein protein. 31 1.7
AB051465-1|BAB21769.1| 1302|Homo sapiens KIAA1678 protein protein. 31 1.7
X12544-1|CAA31061.1| 296|Homo sapiens protein ( Human mRNA for ... 30 2.9
X02902-1|CAA26660.1| 266|Homo sapiens protein ( Human mRNA for ... 30 2.9
X00700-1|CAA25296.1| 266|Homo sapiens protein ( Human mRNA frag... 30 2.9
U84892-1|AAB42072.1| 266|Homo sapiens MHC class II antigen prot... 30 2.9
U70545-1|AAC51630.1| 81|Homo sapiens HLA class II antigen prot... 30 2.9
M57648-1|AAA63218.1| 266|Homo sapiens cell surface glycoprotein... 30 2.9
M35159-1|AAA59791.1| 266|Homo sapiens HLA-DRB1 protein. 30 2.9
M32578-1|AAA59795.1| 266|Homo sapiens HLA-DRB1 protein. 30 2.9
M20555-1|AAA59830.1| 232|Homo sapiens HLA-DRB4 protein. 30 2.9
M20503-1|AAA59826.1| 266|Homo sapiens HLA-DRB1 protein. 30 2.9
M20429-1|AAA59822.1| 266|Homo sapiens HLA-DRB1 protein. 30 2.9
M20138-1|AAA59832.1| 266|Homo sapiens HLA-DRB2 protein. 30 2.9
M16956-1|AAA36278.1| 237|Homo sapiens protein ( Human MHC class... 30 2.9
M16954-1|AAA36276.1| 237|Homo sapiens protein ( Human MHC class... 30 2.9
M16942-1|AAA36296.1| 266|Homo sapiens protein ( Human MHC class... 30 2.9
M16086-1|AAA59679.1| 193|Homo sapiens MHC class II DR-beta prot... 30 2.9
M15992-1|AAA59678.1| 237|Homo sapiens MHC class II DR-beta prot... 30 2.9
M15838-1|AAA52769.1| 220|Homo sapiens HLA-DRB4 protein. 30 2.9
M15375-1|AAA58652.1| 220|Homo sapiens MHC class II HLA-DR-beta-... 30 2.9
M15178-1|AAA35995.1| 246|Homo sapiens protein ( Human HLA-DR be... 30 2.9
M14661-1|AAA59799.1| 220|Homo sapiens HLA-DRB1 protein. 30 2.9
L42143-1|AAA67104.1| 266|Homo sapiens major histocompatibility ... 30 2.9
D89918-1|BAA14037.1| 72|Homo sapiens DRB4*0101102N protein. 30 2.9
D89879-1|BAA14036.1| 72|Homo sapiens HLA-DRB4*0102 protein. 30 2.9
DQ284435-1|ABC66201.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
DQ284433-1|ABC66200.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
DQ284432-1|ABC66199.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
DQ284431-1|ABC66198.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
BX571807-1|CAM25971.1| 266|Homo sapiens major histocompatibilit... 30 2.9
BX296568-4|CAM25996.1| 250|Homo sapiens major histocompatibilit... 30 2.9
BX296568-3|CAM25995.1| 266|Homo sapiens major histocompatibilit... 30 2.9
BX120007-3|CAM26205.1| 266|Homo sapiens major histocompatibilit... 30 2.9
BC024269-1|AAH24269.1| 266|Homo sapiens HLA-DRB1 protein protein. 30 2.9
BC009234-1|AAH09234.1| 266|Homo sapiens major histocompatibilit... 30 2.9
BC005312-1|AAH05312.1| 266|Homo sapiens major histocompatibilit... 30 2.9
AY961075-1|AAX63463.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY961074-1|AAX63462.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY961068-1|AAX63456.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY961063-1|AAX63451.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY961062-1|AAX63450.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY626552-1|AAV41230.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AY195618-1|AAO43051.1| 183|Homo sapiens MHC class II antigen pr... 30 2.9
AY195616-1|AAO43050.1| 183|Homo sapiens MHC class II antigen pr... 30 2.9
AM109973-1|CAJ33580.1| 181|Homo sapiens MHC class II antigen pr... 30 2.9
AM109972-1|CAJ33579.1| 181|Homo sapiens MHC class II antigen pr... 30 2.9
AM109971-1|CAJ33578.1| 181|Homo sapiens MHC class II antigen pr... 30 2.9
AM109970-1|CAJ33577.1| 181|Homo sapiens MHC class II antigen pr... 30 2.9
AM109969-1|CAJ33576.1| 181|Homo sapiens MHC class II antigen pr... 30 2.9
AL713966-2|CAI18079.1| 266|Homo sapiens major histocompatibilit... 30 2.9
AL137064-2|CAC19360.1| 266|Homo sapiens dJ863G3.2 (major histoc... 30 2.9
AJ854064-1|CAH69440.3| 70|Homo sapiens MHC class II antigen pr... 30 2.9
AJ556173-1|CAD89003.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AJ536121-1|CAD60087.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AJ297586-1|CAC08826.2| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AJ297582-1|CAC08822.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AJ297503-1|CAC27124.1| 93|Homo sapiens human leucocyte antigen... 30 2.9
AJ245881-1|CAB75359.1| 264|Homo sapiens human leucocyte antigen... 30 2.9
AJ243701-1|CAB65103.1| 87|Homo sapiens human leucocyte antigen... 30 2.9
AF361549-1|AAM00253.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AF361548-1|AAM00252.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AF291675-1|AAK91825.1| 266|Homo sapiens MHC class II antigen pr... 30 2.9
AF048707-1|AAC31951.1| 219|Homo sapiens MHC class II antigen pr... 30 2.9
AK021601-1|BAB13853.1| 143|Homo sapiens protein ( Homo sapiens ... 30 3.8
AB075501-1|BAE45751.1| 143|Homo sapiens putative protein produc... 30 3.8
BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein pr... 29 6.7
BC039089-1|AAH39089.1| 612|Homo sapiens RPGRIP1 protein protein. 29 6.7
AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protei... 29 6.7
AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protei... 29 6.7
AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protei... 29 6.7
AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protei... 29 6.7
AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protei... 29 6.7
AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protei... 29 6.7
>AF450317-1|AAL48256.1| 180|Homo sapiens MHC class II antigen
protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.72
Identities = 11/17 (64%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+HYN+LV ++NGF+PG
Sbjct: 104 LQHYNLLVCSVNGFYPG 120
>BC104956-1|AAI04957.1| 1700|Homo sapiens SKIP protein protein.
Length = 1700
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 421 HPFQSKDSKECKTIQVVELTSQ-----DDILIPPTQFTDTKDPKVYCIT 290
HP +++ C T ++ E+ DD+L+P TK P +YCIT
Sbjct: 880 HP-NTQEKYNCATSRINEVQVNLSLLGDDLLLPAQSTLQTKHPDIYCIT 927
>BC104954-1|AAI04955.1| 1700|Homo sapiens SKIP protein protein.
Length = 1700
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 421 HPFQSKDSKECKTIQVVELTSQ-----DDILIPPTQFTDTKDPKVYCIT 290
HP +++ C T ++ E+ DD+L+P TK P +YCIT
Sbjct: 880 HP-NTQEKYNCATSRINEVQVNLSLLGDDLLLPAQSTLQTKHPDIYCIT 927
>AB051465-1|BAB21769.1| 1302|Homo sapiens KIAA1678 protein protein.
Length = 1302
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = -2
Query: 421 HPFQSKDSKECKTIQVVELTSQ-----DDILIPPTQFTDTKDPKVYCIT 290
HP +++ C T ++ E+ DD+L+P TK P +YCIT
Sbjct: 511 HP-NTQEKYNCATSRINEVQVNLSLLGDDLLLPAQSTLQTKHPDIYCIT 558
>X12544-1|CAA31061.1| 296|Homo sapiens protein ( Human mRNA for HLA
class II DR-beta (HLA-DR B). ).
Length = 296
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>X02902-1|CAA26660.1| 266|Homo sapiens protein ( Human mRNA for HLA
class II DR-beta 1 (Dw14). ).
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>X00700-1|CAA25296.1| 266|Homo sapiens protein ( Human mRNA
fragment for class II histocompatibility antigen
beta-chain (pII-beta-4). ).
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>U84892-1|AAB42072.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>U70545-1|AAC51630.1| 81|Homo sapiens HLA class II antigen
protein.
Length = 81
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 14 LQHHNLLVCSVNGFYPG 30
>M57648-1|AAA63218.1| 266|Homo sapiens cell surface glycoprotein
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M35159-1|AAA59791.1| 266|Homo sapiens HLA-DRB1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M32578-1|AAA59795.1| 266|Homo sapiens HLA-DRB1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M20555-1|AAA59830.1| 232|Homo sapiens HLA-DRB4 protein.
Length = 232
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>M20503-1|AAA59826.1| 266|Homo sapiens HLA-DRB1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M20429-1|AAA59822.1| 266|Homo sapiens HLA-DRB1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M20138-1|AAA59832.1| 266|Homo sapiens HLA-DRB2 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M16956-1|AAA36278.1| 237|Homo sapiens protein ( Human MHC class II
HLA-DR2 (non-Dw2/non-Dw12) a-associated glycoprotein
beta-chain mRNA, 3' end. ).
Length = 237
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 109 LQHHNLLVCSVNGFYPG 125
>M16954-1|AAA36276.1| 237|Homo sapiens protein ( Human MHC class II
HLA-DR2 (Dw2) a-associated glycoprotein beta-chain mRNA,
3' end. ).
Length = 237
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 109 LQHHNLLVCSVNGFYPG 125
>M16942-1|AAA36296.1| 266|Homo sapiens protein ( Human MHC class II
HLA-DRw53-associated glycoprotein beta- chain mRNA,
complete cds. ).
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>M16086-1|AAA59679.1| 193|Homo sapiens MHC class II DR-beta
protein.
Length = 193
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 65 LQHHNLLVCSVNGFYPG 81
>M15992-1|AAA59678.1| 237|Homo sapiens MHC class II DR-beta
protein.
Length = 237
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 109 LQHHNLLVCSVNGFYPG 125
>M15838-1|AAA52769.1| 220|Homo sapiens HLA-DRB4 protein.
Length = 220
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>M15375-1|AAA58652.1| 220|Homo sapiens MHC class II HLA-DR-beta-4
protein.
Length = 220
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>M15178-1|AAA35995.1| 246|Homo sapiens protein ( Human HLA-DR
beta-chain mRNA, partial cds. ).
Length = 246
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 118 LQHHNLLVCSVNGFYPG 134
>M14661-1|AAA59799.1| 220|Homo sapiens HLA-DRB1 protein.
Length = 220
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 92 LQHHNLLVCSVNGFYPG 108
>L42143-1|AAA67104.1| 266|Homo sapiens major histocompatibility
complex protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>D89918-1|BAA14037.1| 72|Homo sapiens DRB4*0101102N protein.
Length = 72
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 5 LQHHNLLVCSVNGFYPG 21
>D89879-1|BAA14036.1| 72|Homo sapiens HLA-DRB4*0102 protein.
Length = 72
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 5 LQHHNLLVCSVNGFYPG 21
>DQ284435-1|ABC66201.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>DQ284433-1|ABC66200.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>DQ284432-1|ABC66199.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>DQ284431-1|ABC66198.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BX571807-1|CAM25971.1| 266|Homo sapiens major histocompatibility
complex class II DR betang protein) (BECN1) pseudogene
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BX296568-4|CAM25996.1| 250|Homo sapiens major histocompatibility
complex, class II, DR beta 1 protein.
Length = 250
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 171 LQHHNLLVCSVNGFYPG 187
>BX296568-3|CAM25995.1| 266|Homo sapiens major histocompatibility
complex, class II, DR beta 1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BX120007-3|CAM26205.1| 266|Homo sapiens major histocompatibility
complex class II DR beta1 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BC024269-1|AAH24269.1| 266|Homo sapiens HLA-DRB1 protein protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BC009234-1|AAH09234.1| 266|Homo sapiens major histocompatibility
complex, class II, DR beta 5 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>BC005312-1|AAH05312.1| 266|Homo sapiens major histocompatibility
complex, class II, DR beta 4 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY961075-1|AAX63463.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY961074-1|AAX63462.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY961068-1|AAX63456.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY961063-1|AAX63451.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY961062-1|AAX63450.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY626552-1|AAV41230.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AY195618-1|AAO43051.1| 183|Homo sapiens MHC class II antigen
protein.
Length = 183
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AY195616-1|AAO43050.1| 183|Homo sapiens MHC class II antigen
protein.
Length = 183
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AM109973-1|CAJ33580.1| 181|Homo sapiens MHC class II antigen
protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AM109972-1|CAJ33579.1| 181|Homo sapiens MHC class II antigen
protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AM109971-1|CAJ33578.1| 181|Homo sapiens MHC class II antigen
protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AM109970-1|CAJ33577.1| 181|Homo sapiens MHC class II antigen
protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AM109969-1|CAJ33576.1| 181|Homo sapiens MHC class II antigen
protein.
Length = 181
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 104 LQHHNLLVCSVNGFYPG 120
>AL713966-2|CAI18079.1| 266|Homo sapiens major histocompatibility
complex, class II, DR beta 5 protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AL137064-2|CAC19360.1| 266|Homo sapiens dJ863G3.2 (major
histocompatibility complex, class II, DR beta 1)
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AJ854064-1|CAH69440.3| 70|Homo sapiens MHC class II antigen
protein.
Length = 70
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 1 LQHHNLLVCSVNGFYPG 17
>AJ556173-1|CAD89003.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AJ536121-1|CAD60087.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AJ297586-1|CAC08826.2| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AJ297582-1|CAC08822.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+HYN+LV +++GF+PG
Sbjct: 138 LQHYNLLVCSVSGFYPG 154
>AJ297503-1|CAC27124.1| 93|Homo sapiens human leucocyte antigen
DRB4 protein.
Length = 93
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 14 LQHHNLLVCSVNGFYPG 30
>AJ245881-1|CAB75359.1| 264|Homo sapiens human leucocyte antigen
DRB1 protein.
Length = 264
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 136 LQHHNLLVCSVNGFYPG 152
>AJ243701-1|CAB65103.1| 87|Homo sapiens human leucocyte antigen
DRB4 protein.
Length = 87
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 8 LQHHNLLVCSVNGFYPG 24
>AF361549-1|AAM00253.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AF361548-1|AAM00252.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AF291675-1|AAK91825.1| 266|Homo sapiens MHC class II antigen
protein.
Length = 266
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 138 LQHHNLLVCSVNGFYPG 154
>AF048707-1|AAC31951.1| 219|Homo sapiens MHC class II antigen
protein.
Length = 219
Score = 30.3 bits (65), Expect = 2.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 64 LRHYNVLVLNLNGFFPG 14
L+H+N+LV ++NGF+PG
Sbjct: 91 LQHHNLLVCSVNGFYPG 107
>AK021601-1|BAB13853.1| 143|Homo sapiens protein ( Homo sapiens
cDNA FLJ11539 fis, clone HEMBA1002748. ).
Length = 143
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 89 PASASSTTSICLAFSFSCCDSLFFVFFSSSCIKTK 193
PA A T S C+ FS C L+F+ F SSC+KT+
Sbjct: 21 PARAGRTVSSCI---FSSC--LWFLPFRSSCLKTQ 50
>AB075501-1|BAE45751.1| 143|Homo sapiens putative protein product
of Nbla00301 protein.
Length = 143
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 89 PASASSTTSICLAFSFSCCDSLFFVFFSSSCIKTK 193
PA A T S C+ FS C L+F+ F SSC+KT+
Sbjct: 21 PARAGRTVSSCI---FSSC--LWFLPFRSSCLKTQ 50
>BX571740-1|CAE11866.1| 603|Homo sapiens hypothetical protein
protein.
Length = 603
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 393 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 442
>BC039089-1|AAH39089.1| 612|Homo sapiens RPGRIP1 protein protein.
Length = 612
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 402 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 451
>AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 1076 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 1125
>AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protein 1
protein.
Length = 1286
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 1076 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 1125
>AF265667-1|AAG10001.1| 645|Homo sapiens RPGR-interacting protein 1
isoform b protein.
Length = 645
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 435 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 484
>AF265666-1|AAG10000.1| 669|Homo sapiens RPGR-interacting protein 1
isoform a protein.
Length = 669
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 459 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 508
>AF260257-1|AAF91371.1| 902|Homo sapiens RPGR-interacting protein
protein.
Length = 902
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 692 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 741
>AF227257-1|AAG10246.1| 762|Homo sapiens RPGR-interacting protein-1
protein.
Length = 762
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 421 HPFQSKDSKECKT-IQVVELTSQDDILIPP-TQFTDTKDPKVYCITYIYL 278
HP K+S E + + + T DD+++PP +Q D + CI + L
Sbjct: 552 HPVNDKESSEQGSEVSEAQTTDSDDVIVPPMSQKYPKADSEKMCIEIVSL 601
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,500,657
Number of Sequences: 237096
Number of extensions: 1077842
Number of successful extensions: 2315
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2313
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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