Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E08f
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   2.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   5.9  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    25   7.8  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.8  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 241 VYNTYLMPI*ESIFHNAEKVDDLSKTIAF 327
           +YN++++PI +S F+  E  D  ++T+ F
Sbjct: 431 LYNSFIIPILQSFFYITESSDLRNRTVYF 459


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 292  QHCGILILK*ALDKCYKPTVEKLIQNVL 209
            +HCGI I++  L   Y P  ++L+Q V+
Sbjct: 1056 EHCGIRIIEAELFHGYNPEKKELLQEVV 1083


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +1

Query: 112 MTNNFFLENTLHF-----QKMPPLS*YIHTLNCLMSILKHF 219
           ++N F L+    F     +K PPL  Y ++ NCL  I KHF
Sbjct: 853 LSNGFALDENEGFTRFILEKKPPL--YSYSKNCLECIQKHF 891


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 332 HSNAIVFDRSSTFSALWN 279
           H    VFD++S F++LWN
Sbjct: 457 HCLQSVFDKNSDFASLWN 474


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 263 LFENQYSTMLKRLMIYQKQLHLNGAARFPEPSLRIKNLVSPYITSLFPNKCNT 421
           LF   +      +++ ++Q + +G A  PE +LR+  L S      +  K N+
Sbjct: 101 LFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVNMLESMLYALHYAEKRNS 153


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 269  ENQYSTMLKRLMIYQKQLHLNGAARF-PEPSLRIKNLVSP-YITSLF 403
            EN Y ++L  L ++QK    NG  +  P      + L++P  +TS F
Sbjct: 1401 ENLYGSLLSILTVFQKHTSANGGDKVDPVFKDAFQKLITPNLLTSQF 1447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,471
Number of Sequences: 5004
Number of extensions: 33466
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)