Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E05f
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    27   1.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   3.2  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   4.3  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   5.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   7.4  

>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 219 RSIEVSTILSTALLFCFSTLS 157
           RSIE ++I +  L+FCFS LS
Sbjct: 184 RSIEEASIDAITLIFCFSALS 204


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 155  EDKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRI 274
            +D  E+ +   VD   D S +RKS   S + K A  +QR+
Sbjct: 1078 DDNDEQVSGKLVDDSDDVSNDRKSSLSSVSDKDAAVLQRM 1117


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 EDKVEKQNKSAVDKIVDTSIE 217
           +DKV+  +K A+DK V  +IE
Sbjct: 557 KDKVDASDKEAIDKAVKETIE 577


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 155 EDKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQR 271
           +DKV+  +K  VDK V  +IE      + A    E  Q+
Sbjct: 557 KDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQK 595


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 200 QFCPQHFCFVFQL 162
           +FCP+  CF+F+L
Sbjct: 353 RFCPECLCFIFKL 365


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 155 EDKVEKQNKSAVDKIVD 205
           ED++EK +K  +D++V+
Sbjct: 357 EDEIEKTHKEVIDRVVE 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,630
Number of Sequences: 5004
Number of extensions: 9145
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)