Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E05f
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p pro...    39   0.003
AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA...    39   0.003
BT010298-1|AAQ23616.1|  854|Drosophila melanogaster LD10043p pro...    29   3.0  
AE014296-446|AAF47640.1|  854|Drosophila melanogaster CG9004-PA ...    29   3.0  

>AY122237-1|AAM52749.1|  351|Drosophila melanogaster RH74174p
           protein.
          Length = 351

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +2

Query: 2   DENDEPVSDQEVEEKAKRK---VGTKAYXXXXXXXXXXXXXXXXXXXXXXXXXXEDKVEK 172
           DENDEPVSDQE   + KRK   V TKAY                             V K
Sbjct: 61  DENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGG----VTK 116

Query: 173 QNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           +       ++D+   RKSIR STA+K+  T  R+K
Sbjct: 117 RRPRPRFTVLDSG--RKSIRTSTAIKTQATKIRLK 149


>AE014134-1995|AAF53038.1|  351|Drosophila melanogaster CG4621-PA
           protein.
          Length = 351

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +2

Query: 2   DENDEPVSDQEVEEKAKRK---VGTKAYXXXXXXXXXXXXXXXXXXXXXXXXXXEDKVEK 172
           DENDEPVSDQE   + KRK   V TKAY                             V K
Sbjct: 61  DENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGG----VTK 116

Query: 173 QNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           +       ++D+   RKSIR STA+K+  T  R+K
Sbjct: 117 RRPRPRFTVLDSG--RKSIRTSTAIKTQATKIRLK 149


>BT010298-1|AAQ23616.1|  854|Drosophila melanogaster LD10043p
           protein.
          Length = 854

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 161 KVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           KV+K    A+ +  + ++ RK +RQ   ++S    QRIK
Sbjct: 124 KVKKTTGGAIQRQDEEAVRRKELRQQKELESKSKKQRIK 162


>AE014296-446|AAF47640.1|  854|Drosophila melanogaster CG9004-PA
           protein.
          Length = 854

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 161 KVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           KV+K    A+ +  + ++ RK +RQ   ++S    QRIK
Sbjct: 124 KVKKTTGGAIQRQDEEAVRRKELRQQKELESKSKKQRIK 162


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,992,071
Number of Sequences: 53049
Number of extensions: 96279
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)