Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E05f
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    28   2.1  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   6.4  

>Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical
           protein C53A5.8 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -2

Query: 233 VLLISVLL---RYQQFCPQHFCFVFQLCL 156
           +LL S+L+   RY QFCP  F ++F + L
Sbjct: 242 ILLWSILMALNRYFQFCPPSFGYIFNMSL 270


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 161 KVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIKI 280
           K+ K  +S+ DK+VD  IE      S+      T+  +KI
Sbjct: 117 KLPKPERSSTDKVVDQVIEHSGPASSSEETKNSTVPEVKI 156


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 158 DKVEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           + + ++ K++VDK+    +E + I+  T+++  E   RIK
Sbjct: 556 ETMRREYKASVDKVCSLQLELEEIQHETSVELEEAEIRIK 595


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 170 KQNKSAVDKIVDTSIERKSIRQSTAMKS 253
           K++K+A + + +T IERKSI +    KS
Sbjct: 86  KRDKNATECLAETKIERKSICREKTHKS 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,262,042
Number of Sequences: 27780
Number of extensions: 53352
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)