Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E05f
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53400.1 68418.m06635 nuclear movement family protein contain...    30   0.49 
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t...    27   4.5  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    26   7.9  

>At5g53400.1 68418.m06635 nuclear movement family protein contains
           Pfam profile: PF03593 nuclear movement protein
          Length = 304

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +2

Query: 164 VEKQNKSAVDKIVDTSIERKSIRQSTAMKSAETIQ 268
           VEK+ +  + K+V+  +E++S++ + A  SAE I+
Sbjct: 84  VEKKAEKEIVKLVEKKVEKESVKPTIAASSAEPIE 118


>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
           gi:3928758 contains Pfam profile PF04055: radical SAM
           domain protein
          Length = 374

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 188 VDKIVDTSIERKSIRQSTAMKSAETIQRIK 277
           VD +V TS++R  +    +   AET+QR+K
Sbjct: 169 VDYVVITSVDRDDLPDQGSGHFAETVQRLK 198


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 240 VLCLIDFRSIEVSTILSTALLFCFSTLSSIDLSSLGFLMT 121
           ++   D   I+V    +   L   S  S +DL +LGFL T
Sbjct: 830 IVSSFDMAGIDVQLSSTICSLLLESPFSKVDLEALGFLFT 869


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,899,662
Number of Sequences: 28952
Number of extensions: 45850
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)