Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E04f
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   5.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   9.5  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 106 CSTKTAMAPSRPKSWA 153
           C+T T  AP RP   A
Sbjct: 8   CTTATLAAPQRPSGGA 23


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 288 ILSVLFLIILHRSYGFMCTHR 226
           +L  LFL++L  S+G+    R
Sbjct: 4   VLGSLFLLLLSTSHGWQIRDR 24


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 288 ILSVLFLIILHRSYGFMCTHR 226
           +L  LFL++L  S+G+    R
Sbjct: 4   VLGSLFLLLLSTSHGWQIRDR 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,447
Number of Sequences: 438
Number of extensions: 1841
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)