Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301D12f
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 179 2e-46
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 1.3
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.3
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 2.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 3.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 6.7
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 8.9
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 8.9
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 179 bits (436), Expect = 2e-46
Identities = 75/133 (56%), Positives = 112/133 (84%)
Frame = +2
Query: 113 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 292
M EAR ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60
Query: 293 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 472
RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D + + VFES +++SDY++KLM+
Sbjct: 61 RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120
Query: 473 LDLEHLGIPETEY 511
+D EHLGIP+ EY
Sbjct: 121 IDQEHLGIPDIEY 133
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 344 SLTCCLDSCPLRCSYRSGTC 285
SL+C DSC + C GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 62 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 175
L + N+ + IH I+ +EAR++ IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +2
Query: 224 QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNAD 403
+ +D+SH LV A F+ YRC + SMG+ G + + D+ ++
Sbjct: 957 RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013
Query: 404 NVTFVFESPNQEKVSDYE 457
+ FES + D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 149 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 259
K+V + D+LTQ T C D+ +++++ L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 515 SCIQSLEYLNVQDPNS*ASSRNQR 444
SC Q LE N+ DP S S N R
Sbjct: 384 SCFQLLERYNLSDPTSDTSMTNVR 407
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 362 DKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNL 475
D ++V +A DN+D FV E P + SD ++K L
Sbjct: 519 DMESVPTEAADNSDFPKFVTEQP-KTLASDVQLKSYQL 555
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 116 FEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQL 223
FE R L +++ D L FD D+N I++
Sbjct: 227 FEIPSTRPPSLDQLIHLFNDFLRHPVFDFDENAIEM 262
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 423 SKTNVTLSALSCAFIV 376
S TNV LSAL CA+ +
Sbjct: 186 SSTNVLLSALRCAYYI 201
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 131 LRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNS 241
LR++ VL+ KD++T D + + +MDN+
Sbjct: 206 LRNNHCSHVLKGHKDIITSLAISKDGSSLLSNSMDNT 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,157
Number of Sequences: 5004
Number of extensions: 38343
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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