Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D12f
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707...   197   5e-51
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    29   2.2  
01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768     28   5.1  
10_08_0505 + 18384392-18384454,18384593-18384679,18385878-183864...    27   6.8  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    27   6.8  
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535...    27   8.9  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    27   8.9  

>02_05_1136 +
           34369994-34370312,34370398-34370550,34370648-34370745,
           34371563-34371784
          Length = 263

 Score =  197 bits (480), Expect = 5e-51
 Identities = 85/133 (63%), Positives = 114/133 (85%)
 Frame = +2

Query: 113 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 292
           M E RL++ S+LKKVLEAI++L+T A FDC   G  LQAMD+SHV+LV+L LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 293 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 472
           RCDRN+SMGMNL +M+K+L+CAG+ D +TIKA D +D VTF+FESPNQ+K++D+EMKLM+
Sbjct: 61  RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120

Query: 473 LDLEHLGIPETEY 511
           +D EHLGIP++EY
Sbjct: 121 IDSEHLGIPDSEY 133


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 332 SMSKILKCAGDK-DTVTIKAQDNADNVTFVFESPNQEKV 445
           S+ K+    G K + +++K Q  ADN+ F FE P ++ V
Sbjct: 238 SLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLKDYV 276


>01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768
          Length = 145

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 426 LSKTNVTLSALSCAFIVTVSLSPAHL 349
           +  TN+ LS L  AF++++SLSP  L
Sbjct: 1   MQTTNLFLSVLEFAFLISLSLSPQSL 26


>10_08_0505 +
           18384392-18384454,18384593-18384679,18385878-18386409,
           18387042-18387564,18387734-18387791
          Length = 420

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = -1

Query: 429 GLSKTNVTLSALSCAFIVTVSLSPAHLRIFDMLPRFMPIEMFLSQRYLSKPSARRVSDTR 250
           G+ K + T+  L  A + +V    A++R  +M     P+++ +    + +P+A++ S T 
Sbjct: 131 GMEKGSYTIVHLDLASLDSVRQFVANVRRLEM-----PVDVVVCNAAVYQPTAKQPSFTA 185

Query: 249 DT*ELSIACN 220
           D  E+S+  N
Sbjct: 186 DGFEMSVGVN 195


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 350 KCAGDKDTVTIKAQDNADNVTFVFESPNQEK 442
           K   D D V + A+D +D  + VF++ +Q+K
Sbjct: 648 KTTADDDCVIVAAKDGSDYASSVFDTNSQQK 678


>08_02_1339 +
           26252609-26252925,26253025-26253227,26253379-26253536,
           26253802-26253870,26253980-26254461,26254558-26254766,
           26254865-26254901,26254991-26255075,26255186-26255269,
           26255344-26255412,26255520-26255663
          Length = 618

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 279 PSAR-RVSDTRDT*ELSIACN*IPLSSQSKVACVSRSLIASKTFFKI 142
           P AR R+ +  D   + + CN IPL +Q  +A V R  +  K+  KI
Sbjct: 539 PKARWRILEEVDEEPIYLNCNYIPLKNQPHIAKVKRWYLEMKSKKKI 585


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 353 CAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYS 514
           C+  K++  I+  DN  +V    ESP+ ++ S    KLM L+     I ET  S
Sbjct: 264 CSRLKNSGYIRTDDNLLDVLKHQESPSHQRASSVVAKLMGLEGTTPDIHETARS 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,931
Number of Sequences: 37544
Number of extensions: 223714
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)