Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D12f
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...   113   5e-26
AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical...    33   0.092
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   8.0  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score =  113 bits (273), Expect = 5e-26
 Identities = 50/101 (49%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
 Frame = +2

Query: 215 IQLQAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQD 394
           + LQAMD+SHV+LVSL L    FD YRCDR I++G++L +MSK LKCA + DT  +K ++
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYRCDRTINLGLSLANMSKALKCANNDDTCMLKYEE 60

Query: 395 N-ADNVTFVFESPNQEKVSDYEMKLMNLDLEHLGIPETEYS 514
           N  D++ F F  P ++K  D  +K+M++D EHLGIP+ +Y+
Sbjct: 61  NEGDSIIFTFADPKRDKTQDVTVKMMDIDSEHLGIPDQDYA 101


>AL132862-22|CAB70233.1|  169|Caenorhabditis elegans Hypothetical
           protein Y73F8A.27 protein.
          Length = 169

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 248 SLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFES 427
           S++ L +RA GF ++  +       N   M+  ++  GD +    K++D   N+T+V   
Sbjct: 3   SVLRLAMRAKGFSRFLAETQAFPVKNRHFMTSSVRKTGDFEYEDPKSEDEVVNITYVLRD 62

Query: 428 PNQEKV 445
             + K+
Sbjct: 63  GTERKI 68


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 457 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 365
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
            T06E4.3b protein.
          Length = 2514

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 192  LSIAMTMEFSYRLWTTLMCLSCHSLSELMALTSTAAI 302
            LS+  +   S+  W T++ L C  +SE   L+S A+I
Sbjct: 1347 LSLGGSRRESFSRWLTVIILKCAEMSEDAPLSSLASI 1383


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
            T06E4.3a protein.
          Length = 2531

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 192  LSIAMTMEFSYRLWTTLMCLSCHSLSELMALTSTAAI 302
            LS+  +   S+  W T++ L C  +SE   L+S A+I
Sbjct: 1347 LSLGGSRRESFSRWLTVIILKCAEMSEDAPLSSLASI 1383


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
            protein.
          Length = 2514

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 192  LSIAMTMEFSYRLWTTLMCLSCHSLSELMALTSTAAI 302
            LS+  +   S+  W T++ L C  +SE   L+S A+I
Sbjct: 1347 LSLGGSRRESFSRWLTVIILKCAEMSEDAPLSSLASI 1383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,647
Number of Sequences: 27780
Number of extensions: 214641
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)