Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D11f
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 LFTI*RNCVNFIFYFTGRIYLGQSYCY 272
           +F + +N VNF+F   GR   G+  CY
Sbjct: 64  IFCVLQNAVNFVFQGHGRWPFGKVLCY 90


>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 378 LIITGHMPCYSKKPFHITTNHFMKLKC 458
           L+ T HM C    P  IT  H  K+KC
Sbjct: 102 LVPTVHMVCKCPNPEFITGEHCEKIKC 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,680
Number of Sequences: 27780
Number of extensions: 165367
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)