Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D10f
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         78   4e-15
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               38   0.003
SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 31/56 (55%), Positives = 45/56 (80%)
 Frame = +1

Query: 133 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFICIYLHIGRGIYYESFN 300
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FFIC+Y HIGRG+YY S++
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHIGRGLYYGSYS 56


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +1

Query: 193 VNYG*IIRTLHANGASFFFICIYLHIGRGIYYESFNL--KYV*LXXXXXXXXXXXXXXXX 366
           VN+G +IR++H   AS   + + LH+ R      F    +   +                
Sbjct: 4   VNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTG 63

Query: 367 YVLP*GQISFWGATVITNLLSAIPYLGTIL 456
           Y LP  QI +W   ++T +  AIP +G+ L
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPL 93


>SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 300 LKICMINWNYNFIYTNSNCFHRLCLTLRSNIFLG 401
           LKI M+N+ Y FI+    C     L LRSN+  G
Sbjct: 110 LKILMVNYRYKFIFIVKECKVMTDL-LRSNVDSG 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,540
Number of Sequences: 59808
Number of extensions: 189146
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)