Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D09f
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   1.1  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   10.0 

>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 196 YFYLRLYSN*TCIYYLHFN 140
           Y YLRLY N TCI Y   N
Sbjct: 231 YRYLRLYPNSTCIVYQSSN 249


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 118 IDRSNQNS*NVDNKYKFSLNITVNKNTINN 207
           I+   QN    D   K++  + +NK T+NN
Sbjct: 106 IELERQNCMREDGLVKYTNELLLNKETLNN 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,753
Number of Sequences: 5004
Number of extensions: 25808
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)