Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D08f
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.44 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   3.1  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   5.5  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   5.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   5.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   7.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   7.2  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 316 CGYLCFLQSYTPYCF-NRKSFLFQERHQNFSNRSCSKN 206
           C  L F   Y  + F +R+SFLF+  H++  N  CS++
Sbjct: 177 CLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCSEH 214


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 209 FGTGAIAKVLVPFLKEKGFSVEAI----WGITLQEAEIAAKELKIPFFTNKIDDVLLKK 373
           +G G+ A +L  FLKE    +       W I +     +  ++ +   TN+ D +L++K
Sbjct: 99  YGQGSGAALLSQFLKEHTRIIHNPPYEGWNIIMTTGNTSCLDIALRMLTNRGDSILVEK 157


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 324 SSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLTLFSLTFNK 154
           S    + A+    P I + E+P    K   T ++      P  GN++  LF  + NK
Sbjct: 342 SQIIPVEAALGFFPDI-TPEHPLPTDKNIFTYSLKTSSFVPFAGNLITELFLCSDNK 397


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 170 ENKVRTMLPGIGVFGTGAIAKVLVPFLKEKGFSVEAI 280
           ENK R +    G+F  GA+   +VP  +    SV ++
Sbjct: 180 ENKARYIAIFWGIFNLGAVIGSIVPLAQTMHSSVNSV 216


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 382 THILLEKD-VVNFVCEERNFKFF 317
           T+ LLEK+ +VN V  ERNF  F
Sbjct: 212 TNYLLEKNRIVNQVRNERNFHIF 234


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 234 TLAIAPVPKTPIPGNIVLTLFSLTFNKVR 148
           T+ +  V  TPI  N+ LTLF L F   R
Sbjct: 84  TILLFGVLSTPITVNLGLTLFKLYFYNKR 112


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 266 SVEAIWGITLQEAEIAAKELKI--PFFTNKIDDVLLKKNV 379
           + + I+G T+  A I    L I  PF  N+I D+L  KN+
Sbjct: 578 NADFIFGYTIGLASIIGGFLSISFPFDINRIHDLLSHKNL 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,035
Number of Sequences: 5004
Number of extensions: 29829
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)