Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D08f
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899...    27   3.9  
03_02_0634 + 9986742-9987512                                           27   5.2  
01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784     27   5.2  
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     26   9.1  
04_04_1055 + 30444235-30446649                                         26   9.1  
02_04_0646 + 24710348-24711838                                         26   9.1  

>08_01_0913 +
           8995491-8995926,8995976-8997352,8997431-8998174,
           8998402-8998748
          Length = 967

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 LTLLNVSENKVRTMLPGIGVFGTGAIAKVLV 241
           LT LN+S NK+   +P IG+F    I  + V
Sbjct: 575 LTNLNLSFNKLSGPVPNIGIFCNATIVSISV 605


>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 200 IGVFGTGAIAKVLVPFLKEKGFSVEAIWGITL 295
           IGV G+GA  +   P L+E G +   IW  TL
Sbjct: 72  IGVGGSGASFEDEPPLLEELGINTRQIWRKTL 103


>01_05_0357 - 21344146-21344575,21344629-21345455,21345782-21345784
          Length = 419

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 251 KEKGFSVEAIWGITLQEAEIAAKELKIPFF 340
           KE     +  WG+TL  A++   E +IPFF
Sbjct: 149 KEADSLCDVGWGLTLVAADLLLMENQIPFF 178


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 146 SLTLLNVSENKVRTMLPGIGVFGTGA 223
           SL LLN+S N +  M+P  GVF   +
Sbjct: 650 SLQLLNLSFNNLEGMVPTYGVFSNSS 675


>04_04_1055 + 30444235-30446649
          Length = 804

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 185 TMLPGIGVFGTGAIAKVLVPFLKEKGFSVEAI 280
           TM+ G+G  G G  A  L   ++EKG   +A+
Sbjct: 592 TMISGLGQHGFGKKALALFNSMQEKGLKPDAV 623


>02_04_0646 + 24710348-24711838
          Length = 496

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 354 SILFVKKGILSSFAAISASCKVI 286
           +++ V  G+L  FAAI+A C V+
Sbjct: 306 NVIDVCNGLLGGFAAITAGCSVV 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,694,932
Number of Sequences: 37544
Number of extensions: 154224
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)