Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D08f
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin conju...    32   0.12 
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical...    28   2.6  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein17 protein.
          Length = 679

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 221 AIAKVLVPFLKEKGFSVEAIWGITLQEAEIAAKE 322
           +IAK L+P  KE   S++A WG TL+E      E
Sbjct: 277 SIAKELIPRFKENILSIQARWGGTLEETNFRMAE 310


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 330 ILSSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLTLFS 169
           IL+    +  + + + H    EN  +FK     +A++ +PK     NI + +FS
Sbjct: 77  ILAHLFPVVQNAERVSHYKKYENELNFKNIGFPVAVSDIPKVEKLNNIAINVFS 130


>AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical
           protein Y25C1A.4 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 343 CEERNFKFFCGYLCFLQSYTPYCFNRKSFLFQ 248
           CE RN  +F  + CF  S   YC +    L++
Sbjct: 208 CEYRNSPYFSCFSCFQNSVLGYCSSTVEVLYE 239


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 286 TPYCFNRKSFLFQERHQNFSNRSCS 212
           T YC  +K +LF E   N   + CS
Sbjct: 411 TKYCIGQKCYLFYEDINNVKEKGCS 435


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 282 HIASTENP-FSFKKGTRTLAIAPVPKTPI-PGNIVLTLFS 169
           H A T      F+KGT TLA    P TP   G I++ + S
Sbjct: 50  HFAETAGKSMQFRKGTTTLAFVYEPATPADKGGIIVAVDS 89


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 253  FQERHQNFSNRSCSKNPNTR 194
            +Q  HQNF NRS + N + R
Sbjct: 1172 YQSSHQNFDNRSAAHNGDGR 1191


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 253  FQERHQNFSNRSCSKNPNTR 194
            +Q  HQNF NRS + N + R
Sbjct: 982  YQSSHQNFDNRSAAHNGDGR 1001


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,176
Number of Sequences: 27780
Number of extensions: 161486
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)