Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D08f
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53790.1 68418.m06684 hypothetical protein contains Pfam prof...    29   0.82 
At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family...    29   0.82 
At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family...    29   0.82 
At2g40280.1 68415.m04958 dehydration-responsive family protein s...    28   2.5  
At4g23540.1 68417.m03392 expressed protein probable membrane pro...    27   3.3  
At3g20940.1 68416.m02647 cytochrome P450 family protein similar ...    27   4.4  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   4.4  
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF...    27   5.8  
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF...    27   5.8  
At5g45940.1 68418.m05649 MutT/nudix family protein contains Pfam...    27   5.8  
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein...    27   5.8  
At4g08340.1 68417.m01378 Ulp1 protease family protein contains P...    26   7.6  
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ...    26   7.6  
At2g37730.1 68415.m04627 fringe-related protein similarity to pr...    26   7.6  
At1g19370.1 68414.m02410 expressed protein                             26   7.6  

>At5g53790.1 68418.m06684 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 380

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 345 FVKKGILSSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLT 178
           FV  G   S+AA +     I  +    NP+S +  TRT+ + P+    I  ++ L+
Sbjct: 78  FVLLGTSRSWAAFTRIHDTIIFLTDVFNPWSSESSTRTITLPPLVSNGIKASVSLS 133


>At1g04970.2 68414.m00496 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 349

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 224 IAKVLVPFLK---EKGFSVEAIWGITLQEAEIAAKELKI 331
           I  V VP+     EKGF +  + G TLQ AEI   E +I
Sbjct: 293 IQTVFVPYANDHLEKGFPLPIMHGFTLQNAEIICSESEI 331


>At1g04970.1 68414.m00495 lipid-binding serum glycoprotein family
           protein low similarity to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 488

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 224 IAKVLVPFLK---EKGFSVEAIWGITLQEAEIAAKELKI 331
           I  V VP+     EKGF +  + G TLQ AEI   E +I
Sbjct: 432 IQTVFVPYANDHLEKGFPLPIMHGFTLQNAEIICSESEI 470


>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 258 FSFKKGTRTLAIAPVPKTPIPGNIVLTLFSLTFNKVRLQT 139
           F F   + T    P+PK+PIP  IV      T  K++L T
Sbjct: 32  FPFPSLSTTDYYTPIPKSPIPHRIVDVSSDQTPQKMKLNT 71


>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 218 GAIAKVLVPFLKEKGFSVEAIWGITLQ 298
           G++AK++V F+K+K F  EA+  ++LQ
Sbjct: 119 GSLAKLMVKFIKKKSFMHEAV-ALSLQ 144


>At3g20940.1 68416.m02647 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]; similar to cytochrome P450 (SP:H71417)
           [Arabidopsis thaliana]
          Length = 523

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 278 LLQQKILSLSRKAPEL*QSLLFQ 210
           L Q+ ILSLSRK  EL + +LF+
Sbjct: 244 LFQKDILSLSRKFDELLEKILFE 266


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 247 ERHQNFSNRSCSKNPNTR*H 188
           + H N +NRS SKNPN+  H
Sbjct: 50  DHHHNNNNRSGSKNPNSLNH 69


>At5g46780.2 68418.m05763 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 264 NPFSFKKGTRTLAIAPVPKTPIP 196
           NP SF+      A++P P++P P
Sbjct: 176 NPMSFQSPASQFALSPQPRSPFP 198


>At5g46780.1 68418.m05762 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 237

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 264 NPFSFKKGTRTLAIAPVPKTPIP 196
           NP SF+      A++P P++P P
Sbjct: 176 NPMSFQSPASQFALSPQPRSPFP 198


>At5g45940.1 68418.m05649 MutT/nudix family protein contains Pfam
           profile PF00293: NUDIX domain
          Length = 222

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +2

Query: 224 IAKVLVPFLKEKGFSVEAIWGITLQEAEIAAKELKIPFFTNKIDDVLLK 370
           I  VL PF+ +KG SV  + G  L + + A K+L  P    +I DV L+
Sbjct: 104 IISVLEPFVNKKGMSVAPVIGF-LHDKK-AFKQLPNPAEVEEIFDVPLE 150


>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 349

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 146 SLTLLNVSENKVRTMLPGIGVFGTGAIAKVLVPFLKEKGFSVEAIWGITLQEAE 307
           +L  + VS + +  + PG+G      +AK+ V  L ++GF V+ I  +T +  E
Sbjct: 265 ALHAVYVSVSCIAPLTPGVGRLSC-RLAKITVDSLLKQGFMVKNIQKVTNEHPE 317


>At4g08340.1 68417.m01378 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 988

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 262 SFLFQERHQNFSNRSCSKNP 203
           SFLFQ+   N S R+CS +P
Sbjct: 906 SFLFQQAAFNSSKRNCSMDP 925


>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
           identical to cDNA for GATA transcription factor 4
           GI:2959735
          Length = 240

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 369 LRRTSSILFVKKGILSSFAAISASCKVIPHIASTENPFSFKKGTRT 232
           LR    + F    I SS + +++S       AS+ENPFSF   T T
Sbjct: 12  LRIDDLLDFSNDEIFSSSSTVTSSAA--SSAASSENPFSFPSSTYT 55


>At2g37730.1 68415.m04627 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 532

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 257 KGFSVEAIWGITLQ--EAEIAAKELKIPFFTNK 349
           + + V   WG T+Q     + AKEL+ PF T K
Sbjct: 361 RNWYVSVSWGYTIQIYPTLVTAKELETPFLTFK 393


>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 379 HILLEKDVVNFVCEERNFKFF 317
           H+LL  D++NF C  R+ K F
Sbjct: 346 HVLLHGDIMNFKCRVRSKKKF 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,369
Number of Sequences: 28952
Number of extensions: 143501
Number of successful extensions: 334
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)