Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   2.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   2.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   2.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   2.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   2.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   2.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   2.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   2.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   2.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   8.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 SWRASFS*LFIFTATFDSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDRD 144
           S + +FS   I   T     + + ++ F +LP   ++    L +   FVP  +  LS  +
Sbjct: 159 SKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRSN 218

Query: 143 RHQQQ 129
           +  Q+
Sbjct: 219 KESQR 223


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 SWRASFS*LFIFTATFDSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDRD 144
           S + +FS   I   T     + + ++ F +LP   ++    L +   FVP  +  LS  +
Sbjct: 159 SKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRSN 218

Query: 143 RHQQQ 129
           +  Q+
Sbjct: 219 KESQR 223


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 SWRASFS*LFIFTATFDSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDRD 144
           S + +FS   I   T     + + ++ F +LP   ++    L +   FVP  +  LS  +
Sbjct: 159 SKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRSN 218

Query: 143 RHQQQ 129
           +  Q+
Sbjct: 219 KESQR 223


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -2

Query: 323 SWRASFS*LFIFTATFDSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDRD 144
           S + +FS   I   T     + + ++ F +LP   ++    L +   FVP  +  LS  +
Sbjct: 159 SKKPAFSHFLIVFFTETLHTVGIALLIFYILPDLDVVKGAMLTNCICFVPGVLGLLSRSN 218

Query: 143 RHQQQ 129
           +  Q+
Sbjct: 219 KESQR 223


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 41  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 71


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 140 HQQQPDYRTHLALSMRFHN*IQQTNIELPNN 48
           H Q P+ +TH + S ++ +    T +  P +
Sbjct: 85  HLQSPNTQTHPSASCKYADSTSSTGVASPQD 115


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 252 PNIDHHRVKR 281
           PNID H V R
Sbjct: 334 PNIDRHEVTR 343


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 193  STSPTMTMMRATGRREKCMTPTSIIIESN 279
            S+ P+ T+   T        PTSI +E+N
Sbjct: 979  SSEPSETVTIITAEEVPGGPPTSIRVETN 1007


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,084
Number of Sequences: 336
Number of extensions: 798
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)