Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   0.35 
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   3.2  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   3.2  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   4.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    24   5.6  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   7.5  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    24   7.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    23   9.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   9.8  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 15  VKCHLILHINVIIRKFDISLLYLIVKA 95
           +K  LI   +++IRK D+S LY I++A
Sbjct: 227 LKLLLIFSTSILIRKIDVSRLYHIIRA 253


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 230  PVARIIVIVGLVDIFLFVPRFVDDLSD 150
            P+ R  +++GL D+ +    F+D++S+
Sbjct: 975  PIIRNNLVIGLADLTVCFNHFIDEISE 1001


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 36  HINVIIRKFDISLLYLIVKAH 98
           H N II K+D+++L+++   H
Sbjct: 111 HCNRIINKYDLNMLFVVGPGH 131


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 200 LVDIFLFVPRFVDDLSDRDRHQQQPDYRTHLALSMR-FHN 84
           L+ IF F+P  ++   +R R  ++     HL ++ +  HN
Sbjct: 71  LIGIFWFLPPIIEGEDERSRFPRRSMSENHLIITKKSLHN 110


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 243 VYDPNIDHHRV 275
           VYDPN+  HRV
Sbjct: 533 VYDPNVSQHRV 543


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 218 IIVIVGLVDIFLFVPRF 168
           I  I+GL+ IFL +PRF
Sbjct: 77  ISFILGLLGIFLLMPRF 93


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 249 DPNIDHHRVKRCCEYEKSRKRR 314
           DPN++H ++K   +Y + R ++
Sbjct: 729 DPNLEHGKIKIATDYMERRLKK 750


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 182 FVPRFVDDLSDRDRHQQQPDYRTHLALSMR 93
           FV   VD L+DR++     + + HL  S+R
Sbjct: 176 FVRLIVDKLNDREKTLMIQEKKNHLIHSLR 205


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 275 DSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVPRFV 165
           D  M D+G  ++++L  +  +   G+  ++LF P+ V
Sbjct: 572 DEKMDDLGDNYYTILMSSNPVSSYGVGSLYLFQPKIV 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 991,873
Number of Sequences: 5004
Number of extensions: 13093
Number of successful extensions: 45
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)