Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0195 - 15509412-15509580,15510136-15510467,15510494-155109...    27   2.9  
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113...    27   5.1  
03_06_0016 + 31042619-31042795,31043066-31043170                       26   8.9  

>09_04_0195 -
           15509412-15509580,15510136-15510467,15510494-15510900,
           15511467-15511581,15512711-15514044,15514558-15514819
          Length = 872

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 284 ATFDSMMIDVGVIHFSLLPVARIIVIVGLVDIFLFVP 174
           A+F+  +I  GV+  S L VA II+   L +IFL  P
Sbjct: 794 ASFEGPIILTGVVSTSSLLVALIILAKQLGEIFLLCP 830


>06_03_0097 -
           16607936-16608712,16610114-16610320,16611220-16611336,
           16611409-16611690,16611811-16612294,16612791-16612929,
           16613138-16613243,16613396-16613562,16613632-16613707,
           16614173-16614321,16614813-16614874,16615232-16615335,
           16616856-16616950,16617046-16617136,16617785-16617922
          Length = 997

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 249 DPNIDHHRVKRCCEYEKSRKRRS 317
           D +I+HHR K+   + K R RRS
Sbjct: 912 DSSIEHHRSKKRKSHSKHRTRRS 934


>03_06_0016 + 31042619-31042795,31043066-31043170
          Length = 93

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 235 REKCMTPTSIIIESNVAVNMKSQENDARQLS 327
           R K  +  +II  +   VNMK+ END +QLS
Sbjct: 59  RYKVCSWIAIIFCAQSLVNMKNFENDLKQLS 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,077,365
Number of Sequences: 37544
Number of extensions: 79736
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)