Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X92475-1|CAA63213.1|  261|Homo sapiens ITBA1 protein.                  29   5.0  
CR457047-1|CAG33328.1|  261|Homo sapiens CXorf12 protein.              29   5.0  
BC017026-1|AAH17026.1|  261|Homo sapiens transmembrane protein 1...    29   5.0  
BC008203-1|AAH08203.1|  261|Homo sapiens transmembrane protein 1...    29   5.0  
BX323048-1|CAI15306.2|  624|Homo sapiens HFM1, ATP-dependent DNA...    28   8.7  

>X92475-1|CAA63213.1|  261|Homo sapiens ITBA1 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 IFTATFDSMMIDVGVIHFSLLPVA 222
           +FT  FDS+ + VG  H++  PVA
Sbjct: 23  VFTGIFDSVSVQVGYEHYAEAPVA 46


>CR457047-1|CAG33328.1|  261|Homo sapiens CXorf12 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 IFTATFDSMMIDVGVIHFSLLPVA 222
           +FT  FDS+ + VG  H++  PVA
Sbjct: 23  VFTGIFDSVSVQVGCEHYAEAPVA 46


>BC017026-1|AAH17026.1|  261|Homo sapiens transmembrane protein 187
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 IFTATFDSMMIDVGVIHFSLLPVA 222
           +FT  FDS+ + VG  H++  PVA
Sbjct: 23  VFTGIFDSVSVQVGYEHYAEAPVA 46


>BC008203-1|AAH08203.1|  261|Homo sapiens transmembrane protein 187
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 IFTATFDSMMIDVGVIHFSLLPVA 222
           +FT  FDS+ + VG  H++  PVA
Sbjct: 23  VFTGIFDSVSVQVGYEHYAEAPVA 46


>BX323048-1|CAI15306.2|  624|Homo sapiens HFM1, ATP-dependent DNA
           helicase homolog (S. cerevisiae) protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 196 TSPTMTMMRATGRREKCMTPTSIIIESNVAVNMKSQENDARQL 324
           T  T  + R   R  +C+T ++ I+ + +    K +E DAR+L
Sbjct: 133 TQDTAKIFRHGSRITRCITLSNAIVNAGLTSFKKIEETDAREL 175


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,290,062
Number of Sequences: 237096
Number of extensions: 393114
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)