Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical pr...    26   6.1  
Z49968-2|CAA90259.1|  383|Caenorhabditis elegans Hypothetical pr...    26   6.1  

>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 227 VARIIVIVGLVDIFLFVPRFVDDLSDRDRHQQQPDY 120
           +  + V+  ++  F+++P  +D   +RD H QQ  Y
Sbjct: 190 ITALNVVTSVLSPFIYIPIMMDLRKNRDSHSQQQKY 225


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 257 VGVIHFSLLPVARIIVIVGLVDIFLFVPRFVDDLSDRDRHQQQPDYRT 114
           +G++++S +P    I  +G   +FL +P  +    +R  +  + DY T
Sbjct: 85  LGLLYYSRVPTW-FITYLGFTSVFLTIPAMIMFFENRYNYLVRTDYMT 131


>Z73896-4|CAA98057.2|  503|Caenorhabditis elegans Hypothetical
           protein F09E8.6 protein.
          Length = 503

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 166 TNRGTKRKMSTSPTMTMMRATGRREKC 246
           T RGT    ST+P  T    +  +EKC
Sbjct: 443 TTRGTSTATSTTPKTTTTTTSAPKEKC 469


>Z49968-2|CAA90259.1|  383|Caenorhabditis elegans Hypothetical
           protein M110.2 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 308 FS*LFIFTATFDSMMIDVGVIHFSLLPVARIIVIVGLVDI 189
           FS   IFT  F  +  D+ VIH  L     +I++   +DI
Sbjct: 237 FSLTSIFTIGFGDLTPDMNVIHMVLFLAVGVILVTITLDI 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,551,413
Number of Sequences: 27780
Number of extensions: 76187
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)