Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D07f
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   9.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   9.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.5  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 254 GVIHFSLLPVARII 213
           G+++F LLP  R I
Sbjct: 77  GIVYFELLPPNRTI 90


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 242 FSLLPVARIIVIVGLVDIFLFVPRFVDDLS 153
           FSL   A   +   L+DIF+ +  + D LS
Sbjct: 82  FSLFIPAHRKIAARLIDIFMGMRTYEDFLS 111


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 254 GVIHFSLLPVARII 213
           G+++F LLP  R I
Sbjct: 198 GIVYFELLPPNRTI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,225
Number of Sequences: 438
Number of extensions: 1064
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)