BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301D06f (437 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4) 29 1.3 SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 >SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4) Length = 462 Score = 29.5 bits (63), Expect = 1.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 28 ICMINIKCLF*GYGCILYNIYYIFFIALVGRR 123 IC +N C GYGC ++++ Y F +A +R Sbjct: 207 ICQLNKGC---GYGCQVHHVLYCFIVAFGSQR 235 >SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1902 Score = 26.6 bits (56), Expect = 8.9 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +1 Query: 73 ILYNIYYIFFIALVGRRAYGPPDGEWLP 156 +L YY+ F + RR G WLP Sbjct: 1021 VLQKYYYVIFFRMSNRRCKLTTSGPWLP 1048 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,376,144 Number of Sequences: 59808 Number of extensions: 187426 Number of successful extensions: 314 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 314 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 847047381 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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