Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D04f
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   2.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   3.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   3.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   3.5  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   4.6  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    24   6.1  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.0  

>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 111 NGSDLPMNDIPTLRYYYNLGVE 176
           NGSD+  +DI T R Y   G+E
Sbjct: 274 NGSDVFQSDICTCRPYLTFGIE 295


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 96  KSVQPNGSDLPMNDIPTLRYYYNLGVECMW 185
           KS+  + S    NDIPTL  Y+    +C+W
Sbjct: 591 KSLSSDNSAFTENDIPTLGAYW----QCIW 616


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 222 HYSPRDLAHDMQQMSMHDRGMNHNADQXHKH 314
           H S  +  H+  Q   H+   NHN D  HK+
Sbjct: 526 HVSQHEHTHENSQEHHHEH--NHNHDHIHKY 554


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 334 SLPWPPLCLXFWSALWFIPRSCIDI 260
           S P  PL    W +LW +P SC ++
Sbjct: 19  SQPDIPLDDEVWVSLWSVPESCPEV 43


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 304 FWSALWFIPRSCIDICCI--SWARSRGE 227
           F  A+W+IP     I C+  SW    GE
Sbjct: 382 FHGAIWYIPSIAGGIACVAMSWDHKIGE 409


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +3

Query: 225 YSPRDLAHDMQQMSMHDRGMNHNADQXHKHKGGQ 326
           Y P  L +  + M MHD   +H        K  Q
Sbjct: 341 YDPNSLLYISKAMDMHDMSASHQRSLSENRKKNQ 374


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 276 RGMNHNADQXHKHKGGQGNDKPPMNN 353
           +G N NAD+  K   G      P  N
Sbjct: 121 KGFNRNADEKQKRASGSAKSSSPAVN 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,503
Number of Sequences: 5004
Number of extensions: 12971
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)