Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D04f
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)                   31   0.21 
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  

>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  PHVYKSVQPNGSDLPMNDIPTLRYYYNLGVE 176
           P    S+ P G+DLP  D+  LR++YN G +
Sbjct: 868 PAATPSLDPTGADLPQ-DMTVLRFFYNFGYQ 897


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 246  HDMQQMSMHDRGMNHNADQXHKHKGGQ 326
            HD QQ   HD+   H+  Q  +H   Q
Sbjct: 1110 HDQQQQQRHDQQQQHHDQQQQQHHDQQ 1136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,410,407
Number of Sequences: 59808
Number of extensions: 119743
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)