Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D04f
         (358 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    35   0.019
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    35   0.019
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    30   0.55 
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    26   8.9  

>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +3

Query: 111 NGSDLPMNDIPTLRYYYNLGVE 176
           +G DLP+ DI TLR+++NLGV+
Sbjct: 315 SGMDLPLIDITTLRFFFNLGVQ 336


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
           protein H20J18.1a protein.
          Length = 947

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +3

Query: 111 NGSDLPMNDIPTLRYYYNLGVE 176
           +G DLP+ DI TLR+++NLGV+
Sbjct: 315 SGMDLPLIDITTLRFFFNLGVQ 336


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 313 CLXFWSALWFIPRSCID----ICCISWARSRGE 227
           CL FW+ L   P  C+D    +C ++W++   E
Sbjct: 590 CLRFWNTLTAQPMQCVDTGSQVCNVAWSKHSSE 622


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 355 WLFMGGLSLPWPPLCLXFWSALWFIPRSCIDI-CCISW 245
           W F+  + LP     + F++ LWF   +C+   C +SW
Sbjct: 47  WGFVNSIFLP----TVVFYTLLWFAVYACVQYNCWLSW 80


>U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical
           protein F56C9.8 protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 93  YKSVQPNGSDLPMNDIPTLRYYYN 164
           Y+  QP  SD P N  PT  Y YN
Sbjct: 73  YREQQP-ASDFPYNPAPTQNYDYN 95


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 231 PRDLAHDMQQMSMHDRGMNHNADQXHKHKGGQGN 332
           P ++  D Q +S  D G++ ++   H H  G G+
Sbjct: 26  PANIEEDTQSVSSSDSGVSADSIDHHHHGHGHGH 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,203,070
Number of Sequences: 27780
Number of extensions: 81112
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)