Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D04f
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   7.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 317 GRPGQRQAPHEQP 355
           G PG + +PH+ P
Sbjct: 19  GAPGPQPSPHQSP 31


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 81  IPHVYKSVQPNGSDL 125
           +P+VY  + PNGS L
Sbjct: 135 MPNVYIRIFPNGSVL 149


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 81  IPHVYKSVQPNGSDL 125
           +P+VY  + PNGS L
Sbjct: 135 MPNVYIRIFPNGSVL 149


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 144 TLRYYYNLGVECMWAA 191
           TL Y++NL V C+  A
Sbjct: 231 TLYYFFNLIVPCVLIA 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,137
Number of Sequences: 438
Number of extensions: 1086
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)