Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D02f
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         27   5.3  
SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)                   26   7.0  

>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 151 YVFIDRPINFKNCYKTTCSSKL 86
           Y F+DR   +   ++TTCSS+L
Sbjct: 502 YHFVDRARRWNEPFRTTCSSRL 523


>SB_37912| Best HMM Match : BTB (HMM E-Value=3.6e-13)
          Length = 470

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 157 FLYVFIDRPINFKNCY 110
           F+Y  I RPIN  NCY
Sbjct: 58  FIYPTISRPINEDNCY 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,699
Number of Sequences: 59808
Number of extensions: 101002
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)