Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D01f
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    56   1e-09
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    28   0.37 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   6.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   6.0  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    24   7.9  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   7.9  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    24   7.9  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
 Frame = +3

Query: 78  PGMISWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYXW------VVEVGNR----S 227
           P M SWFP+++PIK PM V +  ++    WR  D  RVW+ W      V+  G++    S
Sbjct: 570 PDMFSWFPIYMPIKKPMYVPENSQLEFHMWRLTDGMRVWFEWCANAYLVLRNGSQIKLSS 629

Query: 228 TPLHNANGRS 257
           T +HN +G++
Sbjct: 630 TEVHNISGKA 639



 Score = 27.1 bits (57), Expect = 0.85
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 1   HGFGGYFDCTLY 36
           HGF GYF+ TLY
Sbjct: 542 HGFAGYFEATLY 553


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 17  ILIVPFMVMKSISIVPGTHTPRNDLLVSSLY 109
           +L+VP+ V K+  I P    P++ +++ +LY
Sbjct: 386 VLMVPYRVKKAFPITPDYTVPKDAMVIPTLY 416


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 250 PLALCSGVDRLPTSTTHXYHTRR-ESTHLQNVAVILSPFCTR 128
           P   C+  D  P S T   H RR E TH +NV      FC R
Sbjct: 24  PRFYCTYPD-CPKSFTRKEHLRRHERTH-ENVKAFSCSFCNR 63


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 345 FXCRLRLHYFIAQ*IVCYSALALFKATFPNYDR*HCAVVLIGYPL-QLPI 199
           F  ++R +Y +A   VC++A+   K   P+Y R    ++L+G  L  LPI
Sbjct: 124 FEKQMRQNY-LASVYVCHAAIRRMKEISPSYSR---RILLVGSLLSSLPI 169


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 250 PLALCSGVDRLPTSTTHXYHTRRESTHLQNVAVILSPFCTR 128
           P A  S +DRLP+ ++  +     S  + N  V +SP   R
Sbjct: 102 PHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPLLKR 142


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 220 LPTSTTHXYHTRRESTHLQNVAVILSPFCTRIGVLIGIKTG 98
           +P +T   Y +R    H Q     LSP+C  + V I  + G
Sbjct: 388 IPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEICKRAG 428


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 222 GYPLQLPIXTIHDASQHTSRTLLLFYHPFVLAL 124
           G+PL+     + +   H   T L FY P++  +
Sbjct: 639 GFPLKGTFTNVAEIISHLEGTELSFYFPYMFGI 671


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 99  PVFIPIKTPMRVQKGDKITATFWR--CVDSRRVWY-XWVVEVG 218
           PVFI  +TP  +Q+ + +  +  R    DS RV    W+V +G
Sbjct: 128 PVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIG 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,683
Number of Sequences: 5004
Number of extensions: 31900
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)