Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301D01f
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 43 8e-05
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 28 1.8
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 27 3.2
04_03_0774 - 19457218-19457517,19457575-19457673,19457679-194577... 27 5.6
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142... 26 9.8
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389... 26 9.8
07_01_0578 + 4295386-4296489,4297394-4297507 26 9.8
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 42.7 bits (96), Expect = 8e-05
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 78 PGMISWFPVFIPIKTPMRVQKGDKITATFWRC 173
P M SWFP+F P++ P+ V I FWRC
Sbjct: 536 PNMFSWFPIFFPLRKPIYVPSKTPIEVHFWRC 567
Score = 26.6 bits (56), Expect = 5.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 1 HGFGGYFDCTLY 36
HGF GYFD LY
Sbjct: 511 HGFAGYFDAVLY 522
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -3
Query: 253 RPLALCSGV--DRLPTSTTHXYH 191
R L LC V DRLPTST H +H
Sbjct: 80 RALDLCFAVALDRLPTSTEHQHH 102
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 7 FGGYFDCTLYGNEIDQHCSWYTYAQE*SPG 96
F G+F NE+D +W+++ QE PG
Sbjct: 381 FEGHFKVKNVANELDLLKAWFSHMQEVKPG 410
>04_03_0774 -
19457218-19457517,19457575-19457673,19457679-19457726,
19458382-19458482,19458807-19458918,19459132-19459515,
19459952-19460128
Length = 406
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -2
Query: 152 YFITLLYSHWCLNWNKDWKPGDHSWAYVYQEQC 54
Y I LLY+ W W K W H + Y C
Sbjct: 224 YRIFLLYADWFRLWEKWWTALSHIRSSAYHVLC 256
>12_02_0372 +
18212948-18213821,18213887-18214030,18214128-18214273,
18214854-18214862
Length = 390
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -3
Query: 247 LALCSGVDRLPTSTTHXYHTRRESTHLQNVAVILSPFCTRIGVL 116
+ LC+G + + Y+T R++ + + V + C +GV+
Sbjct: 215 MELCTGGELFDRIISKGYYTERQAAEVARIIVSVIESCHSLGVM 258
>07_03_0856 -
22037345-22037665,22037962-22038108,22038201-22038978,
22039092-22039384,22039663-22039758
Length = 544
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 265 ISELRPLALCSGVDRLPTSTTHXYHTRREST 173
+ +L +A+C GV+ L +T+ Y +R ST
Sbjct: 178 VDKLVSIAVCRGVEDLNLTTSFYYDGQRRST 208
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 217 PTSTTHXYHTRRESTHLQNVAVILSPFCTRIGVLIGIKTGNQEIIP 80
PT T +H RR + HL+ VAV + T + L+ + E +P
Sbjct: 108 PTKTWRKWH-RRVNVHLRRVAVASALAATSVPSLVLARGHRIETVP 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,036,491
Number of Sequences: 37544
Number of extensions: 199338
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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