Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D01f
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.009
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        26   7.7  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 1   HGFGGYFDCTLYGN 42
           HGFGGYFD TLYGN
Sbjct: 364 HGFGGYFDATLYGN 377


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 130 EYKRVIK*QQRSGGVLTRVVYGTNG*LKWVTDQHHCTMLTV 252
           +YKR++K    S  + T +   TNG LK +T    C + T+
Sbjct: 840 QYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTL 880


>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 240 CAVVLIGYPLQLPIXTIHDASQHTSRTLLLFYHP 139
           C+  ++ YPL+  I T H   QH  R   L  HP
Sbjct: 54  CSRAVLYYPLKQHILTYHPLKQHPLRYHPLKQHP 87


>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 241 LCSGVDRLPTSTTHXYHTRRESTHLQNVAVILSPFCTRIGVLIGIKTGNQEII 83
           L + + R   STT+   TR   T+ + +    +P  T  G + G+    QE+I
Sbjct: 320 LVAQICRSFNSTTNSVQTRVTKTYCKALHQEKAPLATHYGAITGLAELGQEVI 372


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 90  SWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYXWVVEVGNRST 230
           SW P +  IK    VQK  KIT  F+ C     + Y + +    R T
Sbjct: 332 SW-PQYDFIKDGTEVQKKSKITELFFSCAVDNTMTYNYTLNRVQRFT 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,938,463
Number of Sequences: 59808
Number of extensions: 246733
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)