Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301D01f
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-3|AAK95874.1| 734|Caenorhabditis elegans Hypothetical pr... 64 4e-11
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 2.2
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 27 2.8
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z48621-2|CAA88547.1| 536|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical pr... 27 5.0
U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase prote... 27 5.0
AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase pro... 27 5.0
U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical p... 26 8.7
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF130443-1|AAD28468.1| 956|Caenorhabditis elegans EAG K+ channe... 26 8.7
AF036695-1|AAB88348.2| 956|Caenorhabditis elegans Egg laying de... 26 8.7
>U10402-3|AAK95874.1| 734|Caenorhabditis elegans Hypothetical
protein C34E10.5 protein.
Length = 734
Score = 63.7 bits (148), Expect = 4e-11
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +3
Query: 78 PGMISWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYXWVVEVGNR-----STPLHN 242
PGM+SWFP IP++ +RV +GD+I+ R VD+ VWY W VE STP+ N
Sbjct: 665 PGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQN 724
Query: 243 ANGRSSEM 266
NG S M
Sbjct: 725 PNGESYYM 732
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 219 YPLQLPIXTIHDASQHTSRTLLLFYHPFVLALVS 118
+P++ I TI DAS HTS + F P +VS
Sbjct: 3 HPIEFCICTISDASAHTSSSRTSFCTPSTSHIVS 36
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 317 LLRNRLFVTVHWPY--LKQHFRTTTVSIVQWC*SVTHF 210
+L N F T +W + H + +S+ WC SV H+
Sbjct: 80 ILANYSFFTFNWYFRWFYLHSKVHLISLANWCSSVAHW 117
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 325 TLFYCAIDCLLQCTGPI*SNI-SELRPLALCSGVDRLPTSTTH 200
T FYC IDC+ TG I + ++ + G D++ + H
Sbjct: 32 TAFYCEIDCVKHPTGCINEQLYKDMADQLVSGGYDKVGYKSVH 74
>Z48621-2|CAA88547.1| 536|Caenorhabditis elegans Hypothetical
protein R07B1.3 protein.
Length = 536
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 87 SFLGVCVPGTMLIDFITIKGTIKI 16
SF+ +C+ T+L+ + +KGT+ +
Sbjct: 512 SFISICILTTLLVIRVRVKGTVSV 535
>Z50742-2|CAA90616.1| 491|Caenorhabditis elegans Hypothetical
protein K09A11.2 protein.
Length = 491
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 203 PXVPYTTRVNTPPERCCYFITLLYSHWC 120
P +PYT V +RC I L SH C
Sbjct: 344 PNMPYTQAVIHEVQRCSNMIPFLGSHQC 371
>U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase protein
2 protein.
Length = 585
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 144 DKITATFWRCVDSRRVWYXWVVEVGNRSTPLHNAN 248
D I W + W+ + VE GN +T H+ N
Sbjct: 357 DTIRQVLWN--EEHNCWFDFDVEEGNHATSFHDTN 389
>AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase
protein.
Length = 585
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 144 DKITATFWRCVDSRRVWYXWVVEVGNRSTPLHNAN 248
D I W + W+ + VE GN +T H+ N
Sbjct: 357 DTIRQVLWN--EEHNCWFDFDVEEGNHATSFHDTN 389
>U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical
protein B0554.5 protein.
Length = 468
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 237 AVVLIGYPLQLPIXTIHDAS-QHTSRTLLLFYHPFVLALV 121
A+ Y + + + T +DA + TS LLF H ++LAL+
Sbjct: 326 AIFTTAYCILIHLSTAYDAPIKPTSEEPLLFRHSYLLALI 365
>Z82090-6|CAB51468.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 25.8 bits (54), Expect = 8.7
Identities = 6/32 (18%), Positives = 19/32 (59%)
Frame = -2
Query: 152 YFITLLYSHWCLNWNKDWKPGDHSWAYVYQEQ 57
+F+++ ++ +C++ K W G + W + + +
Sbjct: 10 FFLSIGWARYCVHNEKSWCQGHNIWGWCFHNK 41
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 137 LYSHWCLNWNK 105
L HWCL WN+
Sbjct: 1045 LVDHWCLEWNR 1055
>Z81526-10|CAB51464.1| 278|Caenorhabditis elegans Hypothetical
protein ZK337.5 protein.
Length = 278
Score = 25.8 bits (54), Expect = 8.7
Identities = 6/32 (18%), Positives = 19/32 (59%)
Frame = -2
Query: 152 YFITLLYSHWCLNWNKDWKPGDHSWAYVYQEQ 57
+F+++ ++ +C++ K W G + W + + +
Sbjct: 10 FFLSIGWARYCVHNEKSWCQGHNIWGWCFHNK 41
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 25.8 bits (54), Expect = 8.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 137 LYSHWCLNWNK 105
L HWCL WN+
Sbjct: 1045 LVDHWCLEWNR 1055
>AF130443-1|AAD28468.1| 956|Caenorhabditis elegans EAG K+ channel
EGL-2 protein.
Length = 956
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 215 HFNYPXVPYTTRVNTPPERCCYFITLLYSHWCLN 114
H+N P TT V P Y +L Y+ C++
Sbjct: 415 HYNIPLSNKTTLVGGPSRTSAYISSLYYTMSCMS 448
>AF036695-1|AAB88348.2| 956|Caenorhabditis elegans Egg laying
defective protein 2 protein.
Length = 956
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 215 HFNYPXVPYTTRVNTPPERCCYFITLLYSHWCLN 114
H+N P TT V P Y +L Y+ C++
Sbjct: 415 HYNIPLSNKTTLVGGPSRTSAYISSLYYTMSCMS 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,261
Number of Sequences: 27780
Number of extensions: 181873
Number of successful extensions: 382
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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