BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS301D01f (354 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c... 71 3e-13 At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 29 0.67 At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 28 2.1 At5g15220.1 68418.m01783 ribosomal protein L27 family protein ri... 26 6.3 At5g01620.2 68418.m00078 expressed protein several hypothetical ... 26 6.3 At5g01620.1 68418.m00077 expressed protein several hypothetical ... 26 6.3 At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c... 26 6.3 At4g05100.1 68417.m00758 myb family transcription factor (MYB74)... 26 6.3 At2g16930.2 68415.m01951 ribosomal protein L27 family protein co... 26 6.3 At2g16930.1 68415.m01950 ribosomal protein L27 family protein co... 26 6.3 At1g24420.1 68414.m03077 transferase family protein similar to d... 26 6.3 >At4g31120.1 68417.m04417 Skb1 methyltransferase family protein contains Pfam profile: PF05185 Skb1 methyltransferase Length = 642 Score = 70.5 bits (165), Expect = 3e-13 Identities = 28/60 (46%), Positives = 35/60 (58%) Frame = +3 Query: 78 PGMISWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYXWVVEVGNRSTPLHNANGRS 257 P M SWFP+F P++ P+ V + FWRC S +VWY W V S P+HN NGRS Sbjct: 579 PNMFSWFPIFFPLRKPVEVHPDTPLEVHFWRCCGSSKVWYEWSVSSPTPS-PMHNTNGRS 637 Score = 26.2 bits (55), Expect = 6.3 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 Query: 1 HGFGGYFDCTLY 36 HGF GYFD LY Sbjct: 554 HGFAGYFDSVLY 565 >At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon catalytic subunit, putative similar to SP|Q07864 DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A) {Homo sapiens}; contains Pfam profiles: PF03175 DNA polymerase type B, organellar and viral, PF00136 DNA polymerase family B, PF03104 DNA polymerase family B, exonuclease domain Length = 2138 Score = 29.5 bits (63), Expect = 0.67 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 7 FGGYFDCTLYGNEIDQHCSWYTYAQE*SPG 96 F GYF T NE++ W+++ QE PG Sbjct: 292 FEGYFKVTNVTNEVELLRKWFSHMQELKPG 321 >At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon catalytic subunit, putative similar to SP|Q07864 DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA polymerase II subunit A) {Homo sapiens}; contains Pfam profiles: PF03175 DNA polymerase type B, organellar and viral, PF00136 DNA polymerase family B, PF03104 DNA polymerase family B, exonuclease domain Length = 2271 Score = 27.9 bits (59), Expect = 2.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 7 FGGYFDCTLYGNEIDQHCSWYTYAQE*SPG 96 F GYF T NE++ W+ + QE PG Sbjct: 303 FEGYFKVTNVKNEVELLQRWFYHMQELKPG 332 >At5g15220.1 68418.m01783 ribosomal protein L27 family protein ribosomal protein L27, Haemophilus influenzae, PIR:F64099 Length = 154 Score = 26.2 bits (55), Expect = 6.3 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = -3 Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41 +G+K G + +IPG + R RFH Sbjct: 66 LGVKKFGGESVIPGNIIVRQRGTRFH 91 >At5g01620.2 68418.m00078 expressed protein several hypothetical proteins - Arabidopsis thaliana Length = 449 Score = 26.2 bits (55), Expect = 6.3 Identities = 9/33 (27%), Positives = 18/33 (54%) Frame = -2 Query: 170 PPERCCYFITLLYSHWCLNWNKDWKPGDHSWAY 72 P ++ +F+T+ +H W+++W PG Y Sbjct: 324 PNKKRVFFVTMSPTH---QWSREWNPGSEGNCY 353 >At5g01620.1 68418.m00077 expressed protein several hypothetical proteins - Arabidopsis thaliana Length = 449 Score = 26.2 bits (55), Expect = 6.3 Identities = 9/33 (27%), Positives = 18/33 (54%) Frame = -2 Query: 170 PPERCCYFITLLYSHWCLNWNKDWKPGDHSWAY 72 P ++ +F+T+ +H W+++W PG Y Sbjct: 324 PNKKRVFFVTMSPTH---QWSREWNPGSEGNCY 353 >At4g31120.2 68417.m04418 Skb1 methyltransferase family protein contains Pfam profile: PF05185 Skb1 methyltransferase Length = 584 Score = 26.2 bits (55), Expect = 6.3 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = +1 Query: 1 HGFGGYFDCTLY 36 HGF GYFD LY Sbjct: 554 HGFAGYFDSVLY 565 >At4g05100.1 68417.m00758 myb family transcription factor (MYB74) contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA putative transcription factor (MYB74) mRNA, partial cds GI:3941505 Length = 324 Score = 26.2 bits (55), Expect = 6.3 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +2 Query: 50 ISIVPGTHTPRNDLL-VSSLYSN*DTNAS 133 + I P THTPR DLL +SS+ S+ N+S Sbjct: 120 MGIDPVTHTPRLDLLDISSILSSSIYNSS 148 >At2g16930.2 68415.m01951 ribosomal protein L27 family protein contains Pfam profile PF01016: ribosomal protein L27 Length = 154 Score = 26.2 bits (55), Expect = 6.3 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = -3 Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41 +G+K G + +IPG + R RFH Sbjct: 66 LGVKKFGGESVIPGNIIVRQRGTRFH 91 >At2g16930.1 68415.m01950 ribosomal protein L27 family protein contains Pfam profile PF01016: ribosomal protein L27 Length = 154 Score = 26.2 bits (55), Expect = 6.3 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = -3 Query: 115 IGIKT-GNQEIIPGRMCTRNNADRFH 41 +G+K G + +IPG + R RFH Sbjct: 66 LGVKKFGGESVIPGNIIVRQRGTRFH 91 >At1g24420.1 68414.m03077 transferase family protein similar to deacetylvindoline 4-O-acetyltransferase [Catharanthus roseus][GI:4091808][PMID:9681034], acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna][GI:6166330][PMID:10588064] Length = 436 Score = 26.2 bits (55), Expect = 6.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 114 IKTPMRVQKGDKITATFWRCV 176 +K P RV+ +TA FWRCV Sbjct: 240 VKNPTRVEA---VTALFWRCV 257 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,154,150 Number of Sequences: 28952 Number of extensions: 164167 Number of successful extensions: 409 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 408 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 449370720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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