Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C12f
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 86 1e-18
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 78 3e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 73 8e-15
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 0.89
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 27 0.89
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 3.6
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 3.6
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 3.6
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 24 6.3
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 23 8.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 8.3
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 85.8 bits (203), Expect = 1e-18
Identities = 39/70 (55%), Positives = 54/70 (77%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 217
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 218 NIGSGVGAAP 247
NIGSG GAAP
Sbjct: 61 NIGSGAGAAP 70
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 78.2 bits (184), Expect = 3e-16
Identities = 38/71 (53%), Positives = 53/71 (74%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 217
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 218 NIGSGVGAAPA 250
NIGS AAPA
Sbjct: 61 NIGS-AAAAPA 70
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 73.3 bits (172), Expect = 8e-15
Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 217
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 218 NIGS-GVGAAP 247
NIGS G +AP
Sbjct: 61 NIGSAGAASAP 71
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 0.89
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 20 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 190
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 191 GINVRDLIT 217
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 0.89
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 241 STHSRADVGDQVTDIDAFQG-FGEQTWPIWLYIYSRR 134
S HSRAD + T D F+ G T I Y+ +RR
Sbjct: 166 SIHSRADSRAETTQSDGFESRSGSPTHDIQSYLVNRR 202
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 2 GLRQLARSKLKMVSKAELACVYSAL 76
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 3.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 209 GHGH*CLPRLWRTDL 165
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 212 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 105
SGHG P L + + M L+ PL + W++ +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 152 LHLQPPLSRWWKFS 111
LH+Q L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 237 PTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMV 121
PTP P + ++ +PSK + P GS S+A + +
Sbjct: 425 PTPAPFSIAAKKSHLPSK--LSFPQDGGSLSSATTLQQL 461
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 5 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 148
+R +A ++++ A + +LV+D V + G+ STI + A++
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIE 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,444
Number of Sequences: 5004
Number of extensions: 22083
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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