Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C12f
(316 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-22
SB_43135| Best HMM Match : CMAS (HMM E-Value=0) 36 0.005
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 27 3.2
SB_86| Best HMM Match : PGK (HMM E-Value=0) 27 4.2
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_42754| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 25 9.8
>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 99 bits (238), Expect = 4e-22
Identities = 47/73 (64%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1 MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60
Query: 215 TNIGS-GVGAAPA 250
+ G+ G G A A
Sbjct: 61 LSAGAPGAGGAVA 73
>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
Length = 254
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 214 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 68
DQ+ I+ F+ G++ WP + + S R + GG+ + II DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 229 RADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 101
+ D+G +VT + G T W+ +YS D G+F T Y
Sbjct: 2098 QVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 219 LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 58
L++ S + P ++ LA PGQ G+T+T F+ PV S+ + TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815
>SB_86| Best HMM Match : PGK (HMM E-Value=0)
Length = 445
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 140 PPLSRWWKFSHQLRQHHH 87
PP RWW++ H LRQ H
Sbjct: 394 PP--RWWRYRHVLRQMGH 409
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 182 ALEGINVRDLITNIGSGVGAAPA 250
A+EG++ RD++T I + G PA
Sbjct: 434 AMEGLSTRDILTAIRNATGPRPA 456
>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 29 LKMVSKAELACVYSALILV 85
L+M KAE+A V+SAL+L+
Sbjct: 179 LRMEQKAEMALVFSALLLL 197
>SB_42754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 238 THSRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 74
T +R + DQ+TDI +G + W Y+ S D FL S ++ + D+
Sbjct: 109 TKARDTIRDQITDITTHRGIMREAWG---YLKSNITDD--TFLDSVSDVGVMVDD 158
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 149 HLQPPLSRWWKFSHQLRQHHHPP 81
H PP S F H L +HH PP
Sbjct: 62 HPPPPASS--SFPHSLHRHHPPP 82
>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 182 LWRTDLANMALHLQPPLSRWWKFSHQ 105
LW TDL + + QPP R W +HQ
Sbjct: 116 LWHTDLLS-SRQRQPPPERNWYQAHQ 140
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 238 THSRADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDE 74
T +R + DQ+TDI +G + W Y+ S D FL S ++ + D+
Sbjct: 146 TKARDTIRDQITDITTHRGIMREAWG---YLKSNITDD--TFLDSVSDVGVMVDD 195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,334,671
Number of Sequences: 59808
Number of extensions: 176413
Number of successful extensions: 415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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