Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C12f
(316 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 98 5e-21
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 98 5e-21
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 98 5e-21
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 98 5e-21
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 98 5e-21
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 97 7e-21
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 91 6e-19
AK128281-1|BAC87365.1| 121|Homo sapiens protein ( Homo sapiens ... 29 2.9
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 97.5 bits (232), Expect = 7e-21
Identities = 44/72 (61%), Positives = 58/72 (80%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
N+G+G G APA
Sbjct: 61 CNVGAG-GPAPA 71
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 91.1 bits (216), Expect = 6e-19
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI
Sbjct: 1 MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60
Query: 215 TNIGSGVGAAPA 250
++G+G G APA
Sbjct: 61 CDVGAG-GPAPA 71
>AK128281-1|BAC87365.1| 121|Homo sapiens protein ( Homo sapiens
cDNA FLJ46418 fis, clone THYMU3012907. ).
Length = 121
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 203 GH*CLPRLWRTDLANMA--LHLQPPLSRWWKFSHQLRQHHHPPG 78
GH CLP ++ LA + +H Q L W HQ HPPG
Sbjct: 5 GHCCLPGGAKSGLAGSSAPVHRQGRLRTVWAPQHQRVAPWHPPG 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,437,185
Number of Sequences: 237096
Number of extensions: 946952
Number of successful extensions: 1671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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