Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C12f
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 113 3e-26
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 109 4e-25
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 29 0.53
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 0.93
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 26 5.0
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 26 5.0
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 26 5.0
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 25 8.7
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 113 bits (271), Expect = 3e-26
Identities = 50/72 (69%), Positives = 63/72 (87%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 215 TNIGSGVGAAPA 250
T++ SG G+ PA
Sbjct: 61 TSVSSGAGSGPA 72
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 109 bits (262), Expect = 4e-25
Identities = 49/72 (68%), Positives = 62/72 (86%)
Frame = +2
Query: 35 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 214
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 215 TNIGSGVGAAPA 250
T++ SG G+ PA
Sbjct: 61 TSVSSGAGSGPA 72
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 23 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 160
S KM+ K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 59 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 229
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 138 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 28
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 138 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 28
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = +2
Query: 38 VSKAELACVYSALILVDDDVAVTGEKISTILK 133
+S+ + C++SA +++ +D+ + G+ +LK
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 237 PTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSST 82
PTP P + P+ A G G++ TA A +PV TSS+T
Sbjct: 490 PTPVPTTT-NTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTT 540
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +1
Query: 25 KTKNGVKS*ISMCLLCSHPGG**CCRNW*ENFHHLESGGCRCRAILARSVRQSLGR 192
K N S S+C +C+H G W E + GC CR ++ + R
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKAR 5062
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 116 ISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 229
I+T+L AV Y+P + A+ ++G L ++IGS
Sbjct: 106 IATLLMPLAVSFG-YFPVIIARVIQGFGASILFSSIGS 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,782,074
Number of Sequences: 27780
Number of extensions: 135558
Number of successful extensions: 409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -