Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C12f
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   6.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 124 HLESGGCRCRAILARSVRQSLGRHQCP*PDHQHRLWSGCC 243
           +L SGGC C+      V +     +CP    +H   S  C
Sbjct: 241 YLPSGGCHCKPGYQADVEKQ-ECTECPIGKFKHEAGSHSC 279


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 158 YWPGLFAKALEGINVRDLITNIGSGVGAA 244
           +WP   + ALEG + +  I N    + A+
Sbjct: 223 FWPSFNSAALEGDDQQRAIINTLLSISAS 251


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 170 LFAKALEGINVRDLITNIGSGVGA 241
           LFA+ + GIN R++      G+ A
Sbjct: 37  LFARCMGGINSRNMDIEHDPGLAA 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,729
Number of Sequences: 438
Number of extensions: 1543
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)