Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C11f
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   0.85 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   1.1  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    24   7.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   7.9  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 16  GIRCQKCLEFGHWSYECK 69
           G++C  C + GH S+EC+
Sbjct: 134 GVKCYSCGKIGHRSFECQ 151



 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 13  QGIRCQKCLEFGHWSYECK 69
           QG  C KC   GH + +C+
Sbjct: 81  QGAECYKCGRVGHIARDCR 99


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = +1

Query: 10  PQGIRCQKCLEFGHWSYEC--------KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 156
           P G  C +C + GHW   C         GK ++       R   KN++   EG  +N
Sbjct: 180 PPGYICYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEGDAAN 236


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 28  QKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKI 171
           +K LE    + E K K    V  S   + +   +A +  +C N  CK+
Sbjct: 42  KKLLELERKALEDKEKNLNFVVESERTLFNSKKRAFDNDECYNDRCKL 89


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 75   TQDPSSSFTYTNHA*ESESQRRRSMQQWQLQDTQQEK 185
            +Q  S S   T    E ESQ+RRS  +  +++ QQE+
Sbjct: 1232 SQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQEE 1268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,593
Number of Sequences: 5004
Number of extensions: 18138
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)