Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C11f
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0619 - 4961588-4962409 50 5e-07
09_01_0032 - 541411-541737,542751-543752 29 1.4
05_07_0219 - 28474661-28475146,28475979-28476644 29 1.4
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 29 1.9
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 28 3.3
11_08_0028 + 27782072-27782171,27782427-27782620 27 4.3
11_08_0013 + 27629086-27629185,27629441-27629634 27 4.3
09_06_0188 - 21441377-21442201 27 4.3
06_03_0368 - 19966741-19967204,19967279-19967450 27 4.3
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 4.3
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 4.3
04_03_0114 + 11417041-11417188,11418325-11418399,11421007-114211... 27 4.3
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 27 4.3
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 5.7
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 5.7
11_02_0077 - 8073139-8073168,8073419-8073751 27 7.6
04_04_0130 + 22969710-22969884,22970019-22970328,22970456-22970996 27 7.6
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 27 7.6
>11_01_0619 - 4961588-4962409
Length = 273
Score = 50.4 bits (115), Expect = 5e-07
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 22 RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKE 138
+CQKC + GHW+YECK +R + RPSRT+ + KN K K+
Sbjct: 95 QCQKCFQPGHWTYECKNERVYISRPSRTQQL-KNPKLKK 132
>09_01_0032 - 541411-541737,542751-543752
Length = 442
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 22 RCQKCLEFGHWSYECKGKRK 81
RC+ CL++GH + +CK ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 19 IRCQKCLEFGHWSYECKGKRKI 84
I C++C +FGH++ EC RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 19 IRCQKCLEFGHWSYECKGKRKI 84
I C +C +FGH++ EC RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 13 QGIRCQKCLEFGHWSYECKGKRKILV-RPSR 102
QG+RC C + H + C K+K V RP +
Sbjct: 298 QGVRCASCHKLDHRALACWNKKKAQVWRPKK 328
>11_08_0028 + 27782072-27782171,27782427-27782620
Length = 97
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 352 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSN 257
C++ CQI+ L S HCCC + +N
Sbjct: 53 CMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
>11_08_0013 + 27629086-27629185,27629441-27629634
Length = 97
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 352 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSN 257
C++ CQI+ L S HCCC + +N
Sbjct: 53 CMSDCQIKGFNGGLCDGESNDHCCCTDEARTN 84
>09_06_0188 - 21441377-21442201
Length = 274
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 22 RCQKCLEFGHWSYEC 66
RC +C E GH SYEC
Sbjct: 166 RCYECGEEGHLSYEC 180
>06_03_0368 - 19966741-19967204,19967279-19967450
Length = 211
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 19 IRCQKCLEFGHWSYECKGKRKI 84
I C +C +FGH++ EC RK+
Sbjct: 171 IECCRCGKFGHFADECDEPRKM 192
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 1 AAFPQGIRCQKCLEFGHWSYECKGKRK 81
AA IRC C GH S+ C K K
Sbjct: 273 AACRDPIRCYTCRRSGHISFRCPNKSK 299
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 22 RCQKCLEFGHWSYE-CKGKRKILVRPSRTRIMHKNLKAKEEGQ 147
+C+ C + GHW+ + CK KR ++ + +A +EG+
Sbjct: 160 KCRYCGKLGHWAKDCCKAKRDREKLAQANLLITEPAQAADEGE 202
>04_03_0114 +
11417041-11417188,11418325-11418399,11421007-11421107,
11422049-11422120,11422239-11422757,11422949-11423149
Length = 371
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 13 QGIRCQKCLEFGHWSYEC 66
+G RC KC EFGH C
Sbjct: 240 KGARCYKCHEFGHIRRNC 257
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 1 AAFPQGIRCQKCLEFGHWSYEC 66
AA P G C KC GHWS +C
Sbjct: 3 AAVPTG--CYKCGRPGHWSRDC 22
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 373 ISTLTFSCLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSNP 254
IS L + +HC + SP+ CC + + S +P
Sbjct: 993 ISHLEHESWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSP 1032
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 379 KRISTLTFSCLNRCQIQNHCCSLNQTRSPI-HCCCHYQTSSNPP 251
+ +S+L + R H + R P H CCHY + PP
Sbjct: 785 RELSSLRYRRRRRAYSCCHSDQMETMRRPCSHDCCHYHSCRPPP 828
>11_02_0077 - 8073139-8073168,8073419-8073751
Length = 120
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Frame = +1
Query: 49 HWSYECK---GKRKILVRPSRTRI---MHKNLKAK-----EEGQCSNGSCKIPNKKK 186
HWS+ C+ G++ I V TR H + K E+G C N C++ ++K
Sbjct: 32 HWSFTCRVGAGRKAIAVGEDDTRENRDCHVSAGRKATTIGEDGACENKDCRVGARRK 88
>04_04_0130 + 22969710-22969884,22970019-22970328,22970456-22970996
Length = 341
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 7 FPQGIRCQKCLEFGHWSYECKGK----RKILVRPSRTRIMHKNLKAKEE 141
+P G+R + E G+W K K RK LV +T + + K E
Sbjct: 78 YPTGLRTNRATESGYWKATGKDKDIFRRKALVGMKKTLVFYTGRAPKGE 126
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 352 CLNRCQIQN-HCCSLNQTRSPIHCCCHYQTSSN 257
C +C+I H C L T +P CC + +N
Sbjct: 456 CTGKCEIPTTHLCPLPNTTTPWVCCLDCKNLTN 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,275
Number of Sequences: 37544
Number of extensions: 122661
Number of successful extensions: 478
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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