Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C11f
(408 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein. 72 7e-13
BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domai... 72 7e-13
AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens ... 72 7e-13
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec... 31 1.1
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein... 31 1.1
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re... 31 1.1
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein... 31 1.1
BC044240-1|AAH44240.1| 502|Homo sapiens immunoglobulin-like dom... 29 6.0
AY672838-1|AAT77413.1| 514|Homo sapiens immunoglobulin-like dom... 29 6.0
DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant pro... 29 8.0
BC051883-1|AAH51883.2| 1166|Homo sapiens castor zinc finger 1 pr... 29 8.0
AL139423-3|CAI22571.1| 1166|Homo sapiens castor zinc finger 1 pr... 29 8.0
AK000328-1|BAA91089.1| 1044|Homo sapiens protein ( Homo sapiens ... 29 8.0
>BC022443-1|AAH22443.1| 192|Homo sapiens ZCCHC10 protein protein.
Length = 192
Score = 72.1 bits (169), Expect = 7e-13
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 13 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 183
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 41 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 100
Query: 184 KR 189
K+
Sbjct: 101 KK 102
>BC005211-1|AAH05211.1| 170|Homo sapiens zinc finger, CCHC domain
containing 10 protein.
Length = 170
Score = 72.1 bits (169), Expect = 7e-13
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 13 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 183
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 19 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 78
Query: 184 KR 189
K+
Sbjct: 79 KK 80
>AK000101-1|BAA90946.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ20094 fis, clone COL04320. ).
Length = 170
Score = 72.1 bits (169), Expect = 7e-13
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 13 QGIRCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEG---QCSNGSCKIPNKK 183
Q +RCQKCLEFGHW+YEC GKRK L RPSRT + K LK KE Q S G + K
Sbjct: 19 QHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKA 78
Query: 184 KR 189
K+
Sbjct: 79 KK 80
>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
(AA -19 to 4525) protein.
Length = 4544
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 46 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
lipoprotein-related protein 1 (alpha-2-macroglobulin
receptor) protein.
Length = 4544
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 46 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
protein protein.
Length = 4544
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 46 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 2499 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 2537
>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
lipoprotein-related protein 1 variant protein.
Length = 2359
Score = 31.5 bits (68), Expect = 1.1
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 46 GHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
GH + C+G R IL R ++ + +A++E +C+NG C
Sbjct: 315 GHVNCSCRGGR-ILQDDLTCRAVNSSCRAQDEFECANGEC 353
>BC044240-1|AAH44240.1| 502|Homo sapiens immunoglobulin-like domain
containing receptor 1 protein.
Length = 502
Score = 29.1 bits (62), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 352 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSNP 254
C +C Q CC + P HCCC + S P
Sbjct: 188 CWCQCCPQYCCCYIRCPCCPAHCCCPEEDLSLP 220
>AY672838-1|AAT77413.1| 514|Homo sapiens immunoglobulin-like
domain-containing receptor 1 alpha' protein.
Length = 514
Score = 29.1 bits (62), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 352 CLNRCQIQNHCCSLNQTRSPIHCCCHYQTSSNP 254
C +C Q CC + P HCCC + S P
Sbjct: 200 CWCQCCPQYCCCYIRCPCCPAHCCCPEEDLSLP 232
>DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 364 LTFSCLNRCQIQNHCCSLNQTRSPIHC----CCHYQTSSNPPMTNQ 239
+ FS L+ C + H C LN + HC C TS++ MT++
Sbjct: 527 MRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHE 572
>BC051883-1|AAH51883.2| 1166|Homo sapiens castor zinc finger 1
protein.
Length = 1166
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 364 LTFSCLNRCQIQNHCCSLNQTRSPIHC----CCHYQTSSNPPMTNQ 239
+ FS L+ C + H C LN + HC C TS++ MT++
Sbjct: 527 MRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHE 572
>AL139423-3|CAI22571.1| 1166|Homo sapiens castor zinc finger 1
protein.
Length = 1166
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 364 LTFSCLNRCQIQNHCCSLNQTRSPIHC----CCHYQTSSNPPMTNQ 239
+ FS L+ C + H C LN + HC C TS++ MT++
Sbjct: 527 MRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHE 572
>AK000328-1|BAA91089.1| 1044|Homo sapiens protein ( Homo sapiens
cDNA FLJ20321 fis, clone HEP09380. ).
Length = 1044
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -3
Query: 364 LTFSCLNRCQIQNHCCSLNQTRSPIHC----CCHYQTSSNPPMTNQ 239
+ FS L+ C + H C LN + HC C TS++ MT++
Sbjct: 405 MRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHE 450
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,241,577
Number of Sequences: 237096
Number of extensions: 717179
Number of successful extensions: 2384
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2384
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -