Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C11f
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 33 0.10
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 33 0.10
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical ... 27 5.2
U23523-1|AAC46560.2| 305|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 26 9.1
Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 26 9.1
AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein. 26 9.1
AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm transme... 26 9.1
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.10
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 25 CQKCLEFGHWSYECKGKRKIL 87
C++C E GHW YEC + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.7 bits (71), Expect = 0.10
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 25 CQKCLEFGHWSYECKGKRKIL 87
C++C E GHW YEC + K L
Sbjct: 667 CRRCAEEGHWGYECPTRPKDL 687
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -3
Query: 391 PLALKR-ISTLTFS-CLNRCQIQNHCCSLNQTRSPIHCCCHYQTS-SNPPMTNQ 239
PL L I+TLT C + C+ + CC + T S H C T N P++N+
Sbjct: 229 PLPLNTSITTLTRCFCDSECERGSKCCPGSITNSNYHACLPALTKIMNEPISNE 282
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 19 IRCQKCLEFGHWSYEC-KGKRKILVRPSRTRIMHKNLKAKEEGQCSN 156
+ C KC E GH++ C KG L + + KE+G+ +N
Sbjct: 250 VTCYKCGEKGHYANRCHKGALAFLSNTAHLAHEQREKDEKEQGRINN 296
>Z93396-8|CAB07710.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 355 SCLNRCQIQNHCCSLNQTRSPIHC 284
SC+ C +QN C SP++C
Sbjct: 45 SCVEECYLQNTCVLAYSPTSPLNC 68
>AL033509-2|CAA22060.2| 333|Caenorhabditis elegans Hypothetical
protein ZC15.2 protein.
Length = 333
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 355 SCLNRCQIQNHCCSLNQTRSPIHC 284
SC+ C +QN C SP++C
Sbjct: 45 SCVEECYLQNTCVLAYSPTSPLNC 68
>U23523-1|AAC46560.2| 305|Caenorhabditis elegans Hypothetical
protein F53A9.5 protein.
Length = 305
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 403 ISIFPLALKRISTLTFSCLNRCQIQNH 323
+S+F L L S L FS L C +Q H
Sbjct: 85 LSVFDLILLSFSALIFSPLQGCVLQGH 111
>Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 440 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 480
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 367 TLTFSCLNRCQI---QNHCCSLNQTRSPIHCCCHYQTSSN 257
T + C + C + +NH C L +T +C C ++S N
Sbjct: 1227 TGSLCCCSECALTCHRNHDCRLKRTSPTAYCDCWEKSSCN 1266
>Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 440 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 480
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
F36A2.13 protein.
Length = 2944
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 367 TLTFSCLNRCQI---QNHCCSLNQTRSPIHCCCHYQTSSN 257
T + C + C + +NH C L +T +C C ++S N
Sbjct: 1227 TGSLCCCSECALTCHRNHDCRLKRTSPTAYCDCWEKSSCN 1266
>AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 426 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 466
>AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm
transmembrane protein protein.
Length = 661
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 43 FGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSC 165
FG Y+C + P M N K G C NG C
Sbjct: 440 FGTSRYQCLCPLSAKLNPESQACMEINEKKCAPGACGNGRC 480
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,719,242
Number of Sequences: 27780
Number of extensions: 110992
Number of successful extensions: 410
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -