Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C11f
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    50   6e-07
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   2.1  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    27   3.7  
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    27   3.7  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    27   4.8  
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    27   6.4  
At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1 pr...    27   6.4  
At2g33480.1 68415.m04104 no apical meristem (NAM) family protein...    27   6.4  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    26   8.5  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    26   8.5  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +1

Query: 22  RCQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEGQCSNGS 162
           +CQKC + GHW+YECK +R  + RPSRT ++ +  L+ K      +GS
Sbjct: 99  QCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGS 146


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 25  CQKCLEFGHWSYECKGK 75
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 25  CQKCLEFGHWSYECKGKRKILVRPSR 102
           C KC + GHWS +C    +    P +
Sbjct: 342 CYKCGKAGHWSRDCTSPAQTTNTPGK 367


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = +1

Query: 25  CQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEG-------QCSNGSCKIPNK 180
           C +C   GH++ EC    ++  R   T    HK+ K  +E          SNG  K   K
Sbjct: 358 CYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENSEHDSTPHESNGKTKKKKK 417

Query: 181 KK 186
           KK
Sbjct: 418 KK 419


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 22  RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQ 147
           RC +C + GH SYEC  K ++  R        +  + +EEG+
Sbjct: 153 RCYECGDEGHLSYECP-KNQLGPRERPPPPKKRGRRKEEEGE 193


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 TRIMHKNLKAKEEGQCSNGSCKIPNK 180
           T +  K +++  +G  SN SCK+PN+
Sbjct: 408 TALTAKEVESLRDGLASNKSCKLPNQ 433


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 19  IRCQKCLEFGHWSYECKGKRKILVRPSRTR 108
           ++C +C E GH++ EC+ +     R S++R
Sbjct: 99  LKCYECGETGHFARECRNRGGTGRRRSKSR 128


>At3g15170.1 68416.m01918 cup-shaped cotyledon1 protein / CUC1
           protein (CUC1) identical to CUP-SHAPED COTYLEDON1 (CUC1)
           (GI:12060422)  [Arabidopsis thaliana]
          Length = 310

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = +1

Query: 7   FPQGIRCQKCLEFGHWSYECK------GKRKILVRPSRTRIMHKNLKAKEEGQC 150
           +P G+R  +  E G+W    K       K K L+   +T + +K    K E  C
Sbjct: 86  YPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSC 139


>At2g33480.1 68415.m04104 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 268

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 331 QNHCCSLNQTRSPIHCCCHYQTSSN 257
           +  CC LN T +   CCC   TSS+
Sbjct: 215 RRRCCDLNLTPATC-CCCSSSTSSS 238


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 316 SLNQTRSPIHCCCHYQTSSNPPMTNQK 236
           SL   R+P  C   YQ S NP +  ++
Sbjct: 258 SLGTNRTPFQCLARYQRSLNPSILKKE 284


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 316 SLNQTRSPIHCCCHYQTSSNPPMTNQK 236
           SL   R+P  C   YQ S NP +  ++
Sbjct: 471 SLGTNRTPFQCLARYQRSLNPSILKKE 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,334,459
Number of Sequences: 28952
Number of extensions: 101076
Number of successful extensions: 317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)