Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C10f
         (388 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CFA90 Cluster: phospholipid-translocating P-typ...    33   2.5  
UniRef50_UPI0000DA2EE1 Cluster: PREDICTED: similar to choline tr...    31   7.7  

>UniRef50_UPI00006CFA90 Cluster: phospholipid-translocating P-type
           ATPase, flippase family protein; n=1; Tetrahymena
           thermophila SB210|Rep: phospholipid-translocating P-type
           ATPase, flippase family protein - Tetrahymena
           thermophila SB210
          Length = 412

 Score = 32.7 bits (71), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 359 PFGVSVFVILFTSSNHSSYSKLYDALTNSIKWCTKLI 249
           P  + +FVILF  +N+ S  + YD+  N    C KL+
Sbjct: 170 PLLLDIFVILFKEANYYSKQRKYDSQINDSNECQKLV 206


>UniRef50_UPI0000DA2EE1 Cluster: PREDICTED: similar to choline
           transporter-like protein 2; n=1; Rattus norvegicus|Rep:
           PREDICTED: similar to choline transporter-like protein 2
           - Rattus norvegicus
          Length = 691

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 14  LRCCLWMIRCFDAF-NRLRYYVC--KIEMLPWLIFDATFSLQSG 136
           L+CC W +  F  F NR  Y +   + E+LPW +   ++ +  G
Sbjct: 591 LKCCFWCLEKFIKFLNRNAYIMVNDRTELLPWTVIIGSYLIAHG 634


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 340,706,581
Number of Sequences: 1657284
Number of extensions: 5752125
Number of successful extensions: 12416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12412
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)