Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C10f
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   1.4  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   1.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   5.5  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   5.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   7.2  

>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 299 KLYDALTNSIKWCTKLIHSIE*ARKCLLD*NELMHSER 186
           K  D   N IK C   +  +   ++CL D N  MH ++
Sbjct: 85  KSVDREQNRIKECLLFVRQVRDFKECLQDLNRAMHHQQ 122


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +2

Query: 17  RCCLWMIRCFDAFNRLRYYVCKIEMLPWLIFDATFSLQSGKHSCENNSGFIFHLIS---- 184
           +  LWM        R +Y     +      F A FS   G++ C N   +I HL      
Sbjct: 114 KSALWMYNFHGKSLRNQYKELYKDWQGSPFFFALFSNAFGENQCRN---WIQHLAPFDYL 170

Query: 185 PVRYALTHSNLV 220
           PVRYA   SNL+
Sbjct: 171 PVRYANVQSNLI 182


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 364 LHLLECPYLLFYLPHRIIVLIL 299
           LH + C Y+   +PH+ I  IL
Sbjct: 850 LHQVTCSYISIRIPHKFIPFIL 871


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 230 RKCLLD*NELMHSEREILDGK*SLNYFRTSVFQTVKKKS 114
           R C+L+ +   H +  ++    + NYFR  ++QT + KS
Sbjct: 306 RFCVLEISLPQHPQPLLICMSCNQNYFRNVLYQTERSKS 344


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 374 LYSITPFGVSVFVILFTSSNHSSYSKLY 291
           L ++ P+G S+  I   SS+HSSYS  Y
Sbjct: 363 LETVIPYG-SLRSIFEDSSSHSSYSPYY 389


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 123 EKVASKISQGSISILHT*YLNLLNASKHLIIHRQHLSTV 7
           EK A +  +G  S     Y N++NAS+  +  RQ+LS++
Sbjct: 451 EKAAQEGRKGMWSGKKPAYENIVNASESSLRSRQYLSSL 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,506,337
Number of Sequences: 5004
Number of extensions: 27466
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)