Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C09f
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 33 0.047
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 28 1.3
07_01_0591 + 4400011-4400106,4400508-4400648,4400987-4401202 26 7.1
06_03_0389 - 20273637-20274383,20274488-20274979 26 7.1
06_03_0387 - 20244279-20245025,20245130-20245621 26 7.1
01_06_0504 + 29867795-29868138,29868994-29869294,29869391-298700... 26 7.1
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151... 26 7.1
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595... 25 9.4
04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286 25 9.4
02_02_0457 + 10503801-10507358 25 9.4
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 193 STASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFXEL 315
S S + I VE V ++ +NRPKALNAL +P+ L
Sbjct: 5 SPDSGDLILVEPAKPGSRVAVVTINRPKALNALTRPMMVSL 45
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 142 NKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLI-QLNRPKALNALCKPLFXE 312
NK K+ SA + FY + + + ++ GL Q N+PKAL + CK F E
Sbjct: 236 NKSKIFSANPNKTCNFYRSWAPNTLNERMLSLV--FGLTNQSNKPKALKSSCKFEFLE 291
>07_01_0591 + 4400011-4400106,4400508-4400648,4400987-4401202
Length = 150
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 152 LHLFSTFFPSKARVTVATEAILRN 81
+HL S FF + R TV+ ++RN
Sbjct: 78 VHLISMFFNTHVRATVSLSGMMRN 101
>06_03_0389 - 20273637-20274383,20274488-20274979
Length = 412
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 106 TVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVEVVGS 237
TV +L K+ N ++ S AS+ S +YENIK+E V +
Sbjct: 278 TVKNCVLKKST-NGVRIKSYEDAASVLTASKFTYENIKMEDVAN 320
>06_03_0387 - 20244279-20245025,20245130-20245621
Length = 412
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 106 TVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVEVVGS 237
TV +L K+ N ++ S AS+ S +YENIK+E V +
Sbjct: 278 TVKNCVLKKST-NGVRIKSYEDAASVLTASKFTYENIKMEDVAN 320
>01_06_0504 +
29867795-29868138,29868994-29869294,29869391-29870078,
29870192-29870421
Length = 520
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 108 CNSCFAGKECTEQV 149
CNSCF+G +C+ ++
Sbjct: 93 CNSCFSGPDCSVRI 106
>01_01_0179 +
1517379-1517721,1518092-1518376,1519462-1519699,
1519796-1519946,1520049-1520446,1520552-1520573
Length = 478
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 261 LNESDILLGADHLNLDVLV*CCAIKLYRCL 172
LNE +LL H NL L+ CCA ++ L
Sbjct: 165 LNEVRLLLKVQHRNLVSLLGCCASSGHKML 194
>07_03_0478 +
18556773-18556883,18557219-18557318,18557807-18559513,
18559709-18560094,18560175-18560246,18560366-18560455
Length = 821
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 188 NFIDAWLVADTTLHLFSTFFPSKARVTVATE 96
++ D WL+ DT++ +F + S +V + E
Sbjct: 514 DYFDGWLMPDTSVKMFVEQYESAVKVKLEKE 544
>04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286
Length = 372
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 122 CWERMY*TSAKWYPQQAKHL*SFIAQHHTRTSRL 223
C E+ +W P++ L S+I Q+ TR RL
Sbjct: 6 CCEKDNVKRGQWTPEEDNKLLSYITQYGTRNWRL 39
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 173 WLVADTTLHLFSTFFPSKARVTVATEAILRNMNHQVL 63
W V LH++S+ FP+ ++ +A I VL
Sbjct: 960 WHVTSIPLHVWSSSFPALQKLQIADSGITGESQSSVL 996
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,349,098
Number of Sequences: 37544
Number of extensions: 148673
Number of successful extensions: 340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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