Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C08f
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces ...    27   0.62 
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    27   1.1  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       25   2.5  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   3.3  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   3.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   4.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   5.8  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   7.6  

>SPBC21B10.04c |nrf1||GTPase regulator Nrf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 122

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   TFFIYLVNFVILGGCLVKLLVYGDSVPKSQSKEAGLF 119
           TF  +L   V+LGG  V LL +GD + K     AGLF
Sbjct: 32  TFLSWLSFAVVLGGLSVGLLNFGDRIGKI---SAGLF 65


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 120 YKHKRLAGNNLKKGDLNNTRLELHRALEACGRSVQAGGPGQAKYTALTAAVLRQ 281
           + H  +A   L   D +   L   + L   G S  AGGPG+  Y+ L   VL Q
Sbjct: 286 FTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQ 339


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 274 STAAVRAVYLA*PGPPAWTL-LPH 206
           STA    +YL  P P  WTL LPH
Sbjct: 59  STAKQGFIYLLQPTPELWTLALPH 82


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 345 CPSTDLQRDVQGSHRTVISAT 283
           CP TDLQ D++   +  IS T
Sbjct: 229 CPKTDLQADIEFKVKGFISGT 249


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +3

Query: 90  KSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRALEACGRSVQA--GGPGQA-KYTAL 260
           KSQS+E     K    A   +K+ D ++   E  + L+  G + ++  G PG+  +YT+ 
Sbjct: 31  KSQSQEEKDTSKITENAKEEVKR-DTSSLAKESLKLLDLNGLNDESYTGDPGKGPEYTSS 89

Query: 261 TAAVLRQXLQRLPFGGFLARRAGDL 335
           T  + R+   R  F GFL    G L
Sbjct: 90  TM-LKREKQARYAFWGFLGLTGGGL 113


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 329  SSATC-KEATER*SLQXLPKHSRCEGRVLSLTWAT 228
            S  TC K   E  SLQ L  H+R +   L+LT AT
Sbjct: 1238 SKNTCLKRFKEERSLQVLTLHARSQSSGLTLTNAT 1272


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  CLVKLLVYGDSVPKSQSKEAGLFYKHK 131
           CL KLL YGD  P +    A L+ + K
Sbjct: 665 CLEKLLPYGDKNPSAYILAAQLYTRLK 691


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 260 EGRVLSLTWATCLDTSSTCFQCSMEF*SRII*IALFEIVASKPF 129
           E + L++ W   L+  S CF  ++E   RI  I+ F++   + F
Sbjct: 655 EVKKLNILWEKLLEYVSVCFFINVEESVRISWISQFQLFIDEMF 698


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 70  FMEILYQKVSPRKLVY 117
           ++E L++K+ P+KL+Y
Sbjct: 67  YIEHLFEKIKPKKLLY 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,412
Number of Sequences: 5004
Number of extensions: 27313
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)