Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C08f
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 32 0.14
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 0.18
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 1.3
04_01_0184 - 2085271-2085387,2085642-2085730,2086582-2086813,208... 29 1.3
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 1.3
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 28 2.3
06_01_0188 - 1464961-1466814 27 3.9
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394 27 3.9
06_03_0592 + 22585546-22588573,22588680-22589032 27 5.2
02_01_0448 + 3227721-3228968 27 5.2
10_01_0092 - 1119203-1119502,1119612-1120412 26 6.9
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 26 6.9
12_01_0882 - 8495717-8495761,8496414-8496860 26 9.1
10_08_0077 + 14690894-14691030,14691258-14691936 26 9.1
03_01_0528 + 3966687-3967643 26 9.1
02_02_0671 - 12811102-12811608 26 9.1
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 31.9 bits (69), Expect = 0.14
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 200 GSMWKKCPG-RWPRSS*VHGPHSGCASAXVAEITVRWLPC 316
G W + PG WPRS P SGCA A A R PC
Sbjct: 97 GRTWARPPGPTWPRSDLGGFPSSGCACAQGACGGARGCPC 136
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 LNNTRLELHRALEACGRSVQAGGPGQAKYT-ALTAAVLRQXLQRLPFGG 308
+N+T L LH A G +V GG + +T AL AA R+ QR G
Sbjct: 4 MNSTNLTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPG 52
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 LNNTRLELHRALEACGRSVQAGGPGQAKYT-ALTAAVLRQXLQRLPFGG 308
+N+T LH A G +V GG + +T AL AA R+ QR G
Sbjct: 4 MNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPG 52
>04_01_0184 -
2085271-2085387,2085642-2085730,2086582-2086813,
2086898-2086990,2087046-2087204,2087298-2088134,
2088353-2088385
Length = 519
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 LNNTRLELHRALEACGRSVQAGGPGQAKYT-ALTAAVLRQXLQRLPFGG 308
+N+T LH A G +V GG + +T AL AA R+ QR G
Sbjct: 4 MNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPG 52
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 LNNTRLELHRALEACGRSVQAGGPGQAKYT-ALTAAVLRQXLQRLPFGG 308
+N+T LH A G +V GG + +T AL AA R+ QR G
Sbjct: 4 MNSTNPTLHLCSPAAGANVSGGGGSSSVFTRALHAAQARKMHQRKQLPG 52
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 6 NTFFIYLVNFVILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLN 170
NTFF Y + + G L ++LV +P Q A L + RL G L +LN
Sbjct: 68 NTFFTYRTQPLTISGILAQILV----LPAGQFMAAVLPSREVRLLGGRLGSFNLN 118
>06_01_0188 - 1464961-1466814
Length = 617
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 159 GDLNNTRLELHRALEACGRSVQAGGPGQAKY 251
G LEL RAL AC S+ AG A Y
Sbjct: 208 GQAEREALELVRALTACADSLSAGNHEAANY 238
>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
Length = 359
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 180 LELHRALEACGRSVQAGGPGQAKYTALTAAVLRQXLQRLPFGGFLARRAGDL 335
L H+ L+ AG Q + A+ AA LQRLPF +L A DL
Sbjct: 306 LASHQNLDQLFHGKVAGAHQQQQQMAMDAA---SSLQRLPFHHYLGLEAADL 354
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 188 PSSIGSMWKKCPGRWPRSS*VHGP 259
PSSIG++ G W R++ ++GP
Sbjct: 479 PSSIGNLSSNLEGLWLRNNKIYGP 502
>02_01_0448 + 3227721-3228968
Length = 415
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 259 SQRLCFGXCCRDYRSVASLHVA 324
+ R+CFG CR +R+ A H A
Sbjct: 41 ADRICFGATCRSWRTSAREHRA 62
>10_01_0092 - 1119203-1119502,1119612-1120412
Length = 366
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 255 PCT*LDLGHLPGHFFHMLPMLDGVLVAYYLDRPF*DCCQQAFYVCK 118
P T ++ + G FF +P D VL+ Y L D C + CK
Sbjct: 241 PTTHSNIQFVGGDFFEFIPAADVVLLKYILHAWQDDDCVKILRRCK 286
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 165 LNNTRLELHRALEACGRS-VQAGGPGQAK 248
L+ T+LE+H A+++ GRS + GP A+
Sbjct: 162 LHRTKLEMHAAVQSGGRSPKRLNGPSSAQ 190
>12_01_0882 - 8495717-8495761,8496414-8496860
Length = 163
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 328 PARRARKPPNGNLCNXCRSTAAVRAVYLA*PGPPAWTL 215
P RR+R PP+ + R VR + PP TL
Sbjct: 108 PPRRSRPPPSAEASDARRQPTVVRGLPQGGEAPPQETL 145
>10_08_0077 + 14690894-14691030,14691258-14691936
Length = 271
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 54 LVKLLVYGDSVPKSQSKEAGLFYKHKRLAGN 146
L+ +Y DS+P+ ++K+AG+ +H +A +
Sbjct: 166 LLLRFMYTDSLPEMKNKDAGVMCQHLLVAAD 196
>03_01_0528 + 3966687-3967643
Length = 318
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 257 PHSGCASAXVAEITVRWLPCTSRWRSVEG 343
PH ASA A +RWLP ++ + G
Sbjct: 84 PHLRAASAAAAHQRLRWLPASAAAAAARG 112
>02_02_0671 - 12811102-12811608
Length = 168
Score = 25.8 bits (54), Expect = 9.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 334 RSPARRARKPPNGNLCNXC-RSTAAVRAVYLA*PGPPAWTLLPHASN 197
RS A PP C+ C TA +A YL+ P PP LLP ++
Sbjct: 64 RSRGLTAASPPVHRHCHCCLLPTATAKAFYLS-PSPP---LLPFGAS 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,389,674
Number of Sequences: 37544
Number of extensions: 208627
Number of successful extensions: 622
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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