Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C08f
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    39   0.001
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   2.7  
AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily a...    27   2.7  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    26   8.3  

>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 27/106 (25%), Positives = 49/106 (46%)
 Frame = +3

Query: 6   NTFFIYLVNFVILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLE 185
           N  ++++ N +++   +VKLL++GD V    S     F   +  A   L  G+L + + +
Sbjct: 540 NMSYVWVFNILMIIYVVVKLLIHGDPVQDFMSVSWQTFVTTREKARAELNSGNLKDAQRK 599

Query: 186 LHRALEACGRSVQAGGPGQAKYTALTAAVLRQXLQRLPFGGFLARR 323
               L    RS+ +  PG     ++    +R  L  L  G ++ARR
Sbjct: 600 FCECLATLDRSLPS--PGVDSVFSVGWECVRHLLNWLWIGRYIARR 643


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 3   FNTFFIYLVNFVILGGCLVKLLVYGDSVPKSQSKEA 110
           FNTFF + + F      +VKL+ +  SVP S   +A
Sbjct: 205 FNTFFWFSICFGFNSVLIVKLIKFKLSVPPSMRSQA 240


>AF016448-1|AAB65956.2|  477|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 196 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 56  GKVTSLWRFCTKKSVQGSWFI 118
           G   S W F T  +V+G+WFI
Sbjct: 283 GNCGSCWAFSTTGNVEGAWFI 303


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  CNTWRLFGKVTSLWR 79
           CNTWR F  + S W+
Sbjct: 207 CNTWRNFDDINSSWK 221


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +3

Query: 6   NTFFIYLVNFVILGGCL-VKLLVYG--DSVPKSQSKEAGLFYKHKRLAGN-NLKKGDLNN 173
           N FF  ++N+ +L  CL ++ L+      VP ++S   G     KR     N+ +  +N 
Sbjct: 51  NAFFGTVINYQLLDSCLAIRQLLNEPMSPVPGAKSPVRGRATSQKRATETPNISQQVVNA 110

Query: 174 TRLELHRALE 203
           TR     ALE
Sbjct: 111 TRRSRRTALE 120


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +3

Query: 30  NFVILGGCLVKLLVYGDSVPKSQSKEAGLFYKHKRLAGNNLKKGDLNNTRLELHRALEAC 209
           NF+++   L+  L +  S      ++   F +HK + G   ++G +++T+ + H   + C
Sbjct: 238 NFLLIIYSLLNSLTHFSSTNCENFEKKNSFRRHKDMDGYECRRG-ISDTKCQCHLLQDIC 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,396,801
Number of Sequences: 27780
Number of extensions: 163148
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)